BtaEX6046275 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013509 | TTC16
Description
Bos taurus tetratricopeptide repeat domain 16 (TTC16), mRNA. [Source:RefSeq mRNA;Acc:NM_001102138]
Coordinates
chr11:98414695-98416329:+
Coord C1 exon
chr11:98414695-98414909
Coord A exon
chr11:98415568-98415812
Coord C2 exon
chr11:98416188-98416329
Length
245 bp
Sequences
Splice sites
3' ss Seq
CTCATATGCCTCTCCCGTAGGGG
3' ss Score
9.04
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CCCAACCTCTGCTATCGAGACCTACACAGTGCCTTGCTATTGGATCCCAAGCACCCACAGGCCAAGGTGCTGCTCCAGGTGATGGTGGGCCAGGCCGAGCAGGCACGCCAAGATGCCGGGGTCCTGGCCGTGCAGGGCAAGTTGCAACATGCGCTGCAGTGCATCAACTGTGCCATTGAGAACAACCCTCTGGACCCCAGCTTCTTCCTCTTCCG
Seq A exon
GGGCACCATGTACCGACGGCTCCAGGATTTTGACTTGGCAGTGGAGGACTTCCTGAAGGCGCTGGACATGATGAGCGACCACCAAGAGGAGCTGGTACAGCAGGCCCAGCGCCAACTGCTGCTGGCCTACAACGATTTCGCGGTGCACTGCTACATGCAGGGAGCCTACCAGGAGAGCGTGCTGCTGCTCAACAAGGCGCTCAAGGACGAGCAGCAGGAGAAAGGCCTCTACATCAACCGCGGCG
Seq C2 exon
ATTGCTTCTTCCAGCTGGGCAACCTGACCTTTGCTGAGGCGGACTACCAGCAGGCGCTGGCACTGAGTCCGAAGGACGAGGGCGCCCACCTGCGCATGGGCCTGTTGCAGGAGAAGTTGGGCTTCTGCGAGCACCGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013509-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(61.8=58.3)
A:
PF134141=TPR_11=PD(36.8=30.1),PF134141=TPR_11=PU(64.7=53.0)
C2:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(22.4=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGATCCCAAGCACCCACAG
R:
AAGCCCAACTTCTCCTGCAAC
Band lengths:
300-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]