BtaINT0154244 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013509 | TTC16
Description
Bos taurus tetratricopeptide repeat domain 16 (TTC16), mRNA. [Source:RefSeq mRNA;Acc:NM_001102138]
Coordinates
chr11:98416188-98420051:+
Coord C1 exon
chr11:98416188-98416329
Coord A exon
chr11:98416330-98419885
Coord C2 exon
chr11:98419886-98420051
Length
3556 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGGCCCACTGTGTCCTGCAGGCA
3' ss Score
7.65
Exon sequences
Seq C1 exon
ATTGCTTCTTCCAGCTGGGCAACCTGACCTTTGCTGAGGCGGACTACCAGCAGGCGCTGGCACTGAGTCCGAAGGACGAGGGCGCCCACCTGCGCATGGGCCTGTTGCAGGAGAAGTTGGGCTTCTGCGAGCACCGGAGCAG
Seq A exon
GTGAGCCGATGGTGGGTGGGGCGGGGCCGGGGGCGGGGCATACTGGGCTATGGGCGGGACCGACTGGGCTATGGGCGGGGCCGGGGAAGTCGGATGAAGCCGCCTGTTTGGGCTCCCTGAGTCAAGATGTCTCTGCTCTCCCAGTTAAGTCTCCTAAATATCAACTTTATTTTCCAAGGTTTCTCTAAAAATCCTTCACTTTTTCCCTGAATATTGTTATGGTAATTAGGCTTTTTATTAAAAAAAAAAAGTAAGTATTCAGTAACATAAGATTCAGAAAACGGAAGTTGCTTCTAATACCTGTCTGCCAACGCCTCCCCTGTCTGGGTGAGTTTGGTAAAGAGTCCTCCAGATTGATTTCTATGCATATATTAACAATTACTATCATTTTACAAAAGTGAGTTCGTGCTAATATTTGACAGGCTTTTTTACTTCCCATGGCTGTTACATATAGGATGACTTCATTCTCTTTTATTGTTTGCAAAGTATTCCATTGGGCGAAAGTACCACAATTAATTTCTCTAGACAATAGTCTGCTGATGAATTTGGGCTGTTTTCAGTGTTTGGTTTTTTTTTTTTTTTTTTTTCCCATAAATAATGCAGTAATGAGACCCAAGACATATGTTTCCATCCATTCATACTGGCAATTCTGTAGTTAGATTGCTGGAAGTTAAATTGTTGAGTGTGAAATTTTAACATTTTAAAGATGATACCCAATTGTTCTCCAAAAAAACAATGAACCAATATAAACTTCCCCCAGTAAAAGAAAGTCTTCATTTCCCCAAACCTCCCTAGCACAGAGTATTAACACTATTTTTTAACTTTGCTAATCTGTTCAGTTCAGTTCAATCGCTCAGTCGTGTCCGACTCTTTGCAACCCCATGAATCGCAGCACACCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTCATCCAGACTCATGTCCTTCGAGTCAGTGATGCCATCCAGCCATCTCCTCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGTCAAAGTATTGGAGTTTCAGCCTTAGTATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTTAGAATGGACTGATTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGCACTCAGCCTTCTTCACAGTCCAACTCTCACATCCATACATGACCACTGGAAAAACCATAGCCTTGACTAGATGGACCTTTGTTGGCTCAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACCTTCCTTCCAAGGAGTAAGTGTATTTTAATTTCATGGCTGCAGTCACCATCGGCAGTGATTTTGGAGCCCCCAAAAATAAAGTCTGACACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGAAGGGACCGAATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCATCTTTTTCACTCTCCACTTTCACTTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTATCATCTGCATATCTGAGGTTATTGATATTTCTCCTGGCAATCTTGATTCCAGCTTGTGTTTCTTCCAGTCCAGCATTTCTCATGATGTACTGTGCATATAAGTTAAATAAACAGGGTGACAATATACAGCCTTGACATACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATACAGGTTTCTCAAGAGGCAAGTCAGGTGGTCTGGTATTCCCATCTCTTTCACAATTTTCCACAGTTTATTGTTATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTGCTTTTTCCATGATCCAGCAGATGTTGGCAATTTGATCTCTGGTTTCTTTGCCTTTTCTAAAACCAGCTTGAACATCAGGAAGTTCATGGTTCACATATTGCTGAAGCCTGGCTTGGAGAATTTTGAGCATTACTTTACTAGCGTGTGAGATGAGTGCAATTGTGTGGTAGTTTGAGCATTCTTTGGGATTGGAATGAAAACTGACTTTTCCAGTCCCATGACCATTGCTGAGTTTTCCAAATTTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTCACGATTTGAAATAGCTCAACTGGAATTCCATCACCTCCACTAGCTTTGTTTGTAGTGATGCTTTCTAAGGCCCACTTGACTTCACATTCCAGGATGTCTGGCTCTAGGTCAGTGATCACACCATCCTGATTATCTGGGTCATGAAGATCTTTTTTGTACAGTTCTTCTGTGTATTCTTGCCATCTCTTCTTAATATCTTCTGCTTCTGTTAGGTCCATACCATTTCTGTCCTTTATCGAGCCCATCTTTGCATGAAATGTTCCCTTGGTATCTCTAATTTTCTTGAAGAGATCTCTAGTCTTTCCCATTCTGTTGTTTTCCTCTATTTCTTTGCACTGATCGCTGAAGAAGGCTTTCTTATCTCTCCTTGCTATTCTTTGGAACTCTGCATTCAGATGCTTATATCTTTCCTTTTCTTCTTTGCTTTTCACTTCTCTTCTTTTCACAGCTATTTGTAAGGCCTCCCCAGACAGCCATTTTGCTTTTTTGCATTTAAAAAAAAAAAAAAAAAGGTTCTCTTGCATTGGATTGACTTTGCATATTTAAATTGTGAGTGCAGGACAGCATTTTTCAAGTGTTTATTCGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTAGGCTACAGTCCACCAGGTCGCTAAGAGTCAGACACGACTGAATGACTTCACTTTCACTTTTCACTTTCACGCATTGGAAGAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGTGGAGCCTGGTGGGCTGCCATCTCTGGGGTCGCATAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGTAGCAGCATTGGCACATTATGGTCTGTCTAAATTGTTCTCCCATTTGCTTTTAAATTGCCCAGTCTTTTTGATTATAAGAGTTCTTTGTAGGCTAGAAAGTTTGATTATTATCTGCCTTATGTGGCAAAATATTCTTCCCTATTTGCTGATTTCTTTTGTGGTGTTTTTGCTACTAAATAATGGGATTTGTGGTCAATTAGTTTGTTTGTTTGTTTTTTTCCATATTTAGCTGCTGGGTTTATGACATTCAGAAAGCCCTTCCTATTCCAAGATCATAAAAATGTCCACTTATTTTGGGGCTTTACACTAGCATTTAAGTGTTGGGTCCATCAAGAGGGGTGTTGATGTCAGGGAGCAGAAACTAGCCTTGTTTTCCCTAAACTCCCCAGGGAGGTCCAGAAGTGCCCATTTCTCCTAGGTGGCCCGGCTCAGAGCACCCTGTGGCCCACTGTGTCCTGCAG
Seq C2 exon
GCAGTTCCAGAAGGCAGAGAACCACTTCTCAATGGCCATCCAGCACAATCCCCAGAAGCCCCAGTACTACCTGTACCGTGCCCGGAGCCGGCAGCTCATGCAGAACATTTTTGGGGCCCGCCAGGATGTTGCCACTGTCCTGCTCCTTGACCCCAAGCAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013509:ENSBTAT00000043180:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(22.4=31.2)
A:
NA
C2:
PF134141=TPR_11=PD(76.1=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development