HsaINT1045493 @ hg38
Intron Retention
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr9:127724756-127726404:+
Coord C1 exon
chr9:127724756-127724897
Coord A exon
chr9:127724898-127726238
Coord C2 exon
chr9:127726239-127726404
Length
1341 bp
Sequences
Splice sites
5' ss Seq
CAAGTGCGT
5' ss Score
6.68
3' ss Seq
GGACCCACTGTGTCGTGCAGGCA
3' ss Score
3.8
Exon sequences
Seq C1 exon
ATTGCTTCTTCCAGCTGGGCAACCTGGCCTTTGCCGAGGCGGACTACCAGCAGGCGCTGGCGCTGAGCCCTCAGGACGAGGGCGCCAACACGCGCATGGGCCTGCTGCAGGAGAAGATGGGCTTCTGCGAGCAGAGGCGCAA
Seq A exon
GTGCGTGGGCTCCCGCCCCCACGGTGGGCGGGGCAGGCCCGAGGGCAGGGCGGGCAGGAGGCCAACTGCTGGGATCCCTGGGTCAATCAAGCTGCTTCTCTCCTCGGGGGCGATGGCTCATCCCTGTAATCCCCACGCAGGTGGATCGCCTGAGGTCGAGAGTTTGAGACCAATCTGGCCAATATGGTGAAACCCATCTCTATTAAAAATATAAAAAAATTTAAAAATTAGCTGGGCGTGGTGGTGTGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCACGGGAATCCCTTGAGCCAGGGAGGCGGAGCTGGCAGTTAGCCAGGATTGCGCCACTGCACTCCAGCCTGAGCGACAGAGTGAGACTCTGTCCCAAAAAAAAAGGCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACCTGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTCGTGGTGGGCGCCTATAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCAAGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGCTTCTCTCTCCGTTATGCTTTCCTTTTTTTTAGATGGAGTCTCACTCTGTTGCCCAGACTGGAGTGTAATGGCGCCATCTCAGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAACTCTCCTGCCTTAGCTTCCCAAGTAGCTGGGATTACAGGCACCTGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGCTGGCCAGGCTGGTCTCAAACTTCCCACCTCAGGCGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCGGCCTATACTGCTTTTCTTTGTGATATTTTTACTACTCAATAACTTGGAACTTAATCATAGTCAAATTAATATATTCATTTTAGCCGATGGGTTTATGCCATTCTCAGAAACGCCTTCCCTACCCCAAGATCATAAAGATATTCATTGATGTTGGAGTTTCACACTGGCATCGAAGTGTTGGCTTCATCAGGGACGTACCTGATGGAGAGAGAGGAGAGGGGCGTGGTGAGGGGAGCAGACCTAGCCTGGTTTCCCTCTAACTCCTCAGTGGGGCCCAGTAGCCACCATTTTCCCCACAGATGGCCCAGCTCATAGCAGCTTGGGACCCACTGTGTCGTGCAG
Seq C2 exon
GCAGTTCCAGAAGGCAGAGAACCACTTCTCCACGGCCATCCGGCACAACCCCCAGAAGGCCCAGTACTACCTGTACCGGGCCAAGAGCCGGCAGCTGCTGCAGAACATTTTTGGGGCCCGCCAGGATGTGGCCACTGTCCTGCTCCTCAACCCCAAGCAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094:ENST00000373289:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(20.0=27.1)
A:
NA
C2:
PF134141=TPR_11=PD(78.5=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTTCTTCCAGCTGGGC
R:
TTTGGTTGCTTGGGGTTGAGG
Band lengths:
307-1648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains