DreINT0021843 @ danRer10
Intron Retention
Gene
ENSDARG00000104035 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr5:65281328-65281714:-
Coord C1 exon
chr5:65281573-65281714
Coord A exon
chr5:65281494-65281572
Coord C2 exon
chr5:65281328-65281493
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAAGTATTT
5' ss Score
1.24
3' ss Seq
GTGAATGTGATTTGTTGCAGGAA
3' ss Score
7.93
Exon sequences
Seq C1 exon
ATAGTTTTTTTAAGCAGTGTGAATGGACCTTTGCTCTGGCTGACTATCAGCAAGCTGAGGAGTTGGACCTGGAAAACACAGCTATCTGGCTACGACTTGCTGTTATTCACAACACACTGGGTCTGCAGAGCTACGAAGACAA
Seq A exon
GTATTTAACGTTATGGTAAAATGCGACATTCTTCACCTCATGTTTATTGATGTCATGTCGTGAATGTGATTTGTTGCAG
Seq C2 exon
GAAGTTCCAGGAAGCAGCAGAAAGGTTTTCTGTTGCAATAAAGTACAACCCTGGTGTAGTTCAGTATTATGAGAATCGAGCCAAATCTTTTAACAAACTGGGCAAAACAGAGGAGGCCAAAAACGATGCCATCAGTGTTCTTGTCTTAGAGCCCACCAATGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104035:ENSDART00000170677:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(36.2=52.1),PF134141=TPR_11=PU(22.1=31.2)
A:
NA
C2:
PF134141=TPR_11=PD(75.0=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACAACACACTGGGTCTGC
R:
TGATGGCATCGTTTTTGGCCT
Band lengths:
171-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]