DreALTD0002174-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000104035 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr5:65281328-65281710:-
Coord C1 exon
chr5:65281595-65281710
Coord A exon
NA
Coord C2 exon
chr5:65281328-65281493
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTCTGC
5' ss Score
-0.83
3' ss Seq
GTGAATGTGATTTGTTGCAGGAA
3' ss Score
7.93
Exon sequences
Seq C1 exon
TTTTTTTAAGCAGTGTGAATGGACCTTTGCTCTGGCTGACTATCAGCAAGCTGAGGAGTTGGACCTGGAAAACACAGCTATCTGGCTACGACTTGCTGTTATTCACAACACACTGG
Seq A exon
NA
Seq C2 exon
GAAGTTCCAGGAAGCAGCAGAAAGGTTTTCTGTTGCAATAAAGTACAACCCTGGTGTAGTTCAGTATTATGAGAATCGAGCCAAATCTTTTAACAAACTGGGCAAAACAGAGGAGGCCAAAAACGATGCCATCAGTGTTCTTGTCTTAGAGCCCACCAATGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104035-10-11,11-11-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(36.2=52.1),PF134141=TPR_11=PU(22.1=31.2)
A:
NA
C2:
PF134141=TPR_11=PD(75.0=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAAGCTGAGGAGTTGGA
R:
AAACCTTTCTGCTGCTTCCTGG
Band lengths:
102-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]