HsaINT0174084 @ hg19
Intron Retention
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:26536]
Coordinates
chr9:130487035-130488683:+
Coord C1 exon
chr9:130487035-130487176
Coord A exon
chr9:130487177-130488517
Coord C2 exon
chr9:130488518-130488683
Length
1341 bp
Sequences
Splice sites
5' ss Seq
CAAGTGCGT
5' ss Score
6.68
3' ss Seq
GGACCCACTGTGTCGTGCAGGCA
3' ss Score
3.8
Exon sequences
Seq C1 exon
ATTGCTTCTTCCAGCTGGGCAACCTGGCCTTTGCCGAGGCGGACTACCAGCAGGCGCTGGCGCTGAGCCCTCAGGACGAGGGCGCCAACACGCGCATGGGCCTGCTGCAGGAGAAGATGGGCTTCTGCGAGCAGAGGCGCAA
Seq A exon
GTGCGTGGGCTCCCGCCCCCACGGTGGGCGGGGCAGGCCCGAGGGCAGGGCGGGCAGGAGGCCAACTGCTGGGATCCCTGGGTCAATCAAGCTGCTTCTCTCCTCGGGGGCGATGGCTCATCCCTGTAATCCCCACGCAGGTGGATCGCCTGAGGTCGAGAGTTTGAGACCAATCTGGCCAATATGGTGAAACCCATCTCTATTAAAAATATAAAAAAATTTAAAAATTAGCTGGGCGTGGTGGTGTGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCACGGGAATCCCTTGAGCCAGGGAGGCGGAGCTGGCAGTTAGCCAGGATTGCGCCACTGCACTCCAGCCTGAGCGACAGAGTGAGACTCTGTCCCAAAAAAAAAGGCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACCTGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTCGTGGTGGGCGCCTATAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCAAGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGCTTCTCTCTCCGTTATGCTTTCCTTTTTTTTAGATGGAGTCTCACTCTGTTGCCCAGACTGGAGTGTAATGGCGCCATCTCAGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAACTCTCCTGCCTTAGCTTCCCAAGTAGCTGGGATTACAGGCACCTGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGCTGGCCAGGCTGGTCTCAAACTTCCCACCTCAGGCGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCGGCCTATACTGCTTTTCTTTGTGATATTTTTACTACTCAATAACTTGGAACTTAATCATAGTCAAATTAATATATTCATTTTAGCCGATGGGTTTATGCCATTCTCAGAAACGCCTTCCCTACCCCAAGATCATAAAGATATTCATTGATGTTGGAGTTTCACACTGGCATCGAAGTGTTGGCTTCATCAGGGACGTACCTGATGGAGAGAGAGGAGAGGGGCGTGGTGAGGGGAGCAGACCTAGCCTGGTTTCCCTCTAACTCCTCAGTGGGGCCCAGTAGCCACCATTTTCCCCACAGATGGCCCAGCTCATAGCAGCTTGGGACCCACTGTGTCGTGCAG
Seq C2 exon
GCAGTTCCAGAAGGCAGAGAACCACTTCTCCACGGCCATCCGGCACAACCCCCAGAAGGCCCAGTACTACCTGTACCGGGCCAAGAGCCGGCAGCTGCTGCAGAACATTTTTGGGGCCCGCCAGGATGTGGCCACTGTCCTGCTCCTCAACCCCAAGCAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094-TTC16:NM_144965:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.272
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(20.0=27.1)
A:
NA
C2:
PF134141=TPR_11=PD(78.5=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTTCTTCCAGCTGGGC
R:
TTTGGTTGCTTGGGGTTGAGG
Band lengths:
307-1648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)