BtaEX6046278 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013509 | TTC16
Description
Bos taurus tetratricopeptide repeat domain 16 (TTC16), mRNA. [Source:RefSeq mRNA;Acc:NM_001102138]
Coordinates
chr11:98411010-98412887:+
Coord C1 exon
chr11:98411010-98411153
Coord A exon
chr11:98412555-98412655
Coord C2 exon
chr11:98412758-98412887
Length
101 bp
Sequences
Splice sites
3' ss Seq
ACAATCCTCTGTGTCACCAGGGC
3' ss Score
8.41
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GTAGAATTCTATGCCTTAAGAGCCGAGGCTTATATCCAGCTCTGCGACTTCTCCTCGGCCGCCCAGAACCTTCGGAAGGCCTACCACTCCCAGCCAGAGAACAGCAACTACCTGGAGCGGCTCGCCCTGGTGCTTTACCTGAAG
Seq A exon
GGCCAGTGCCTTTTTGAGCAATGCGCCTTTCTGGATGCCTTGACCGTTTTCTCCCAAGCCTCTGAGCTCCAGCCTGAGAAATTCTGCTTCCGGTATCGATG
Seq C2 exon
CATGGCCTGTCTCCTGGCCCTCAAAAAGCATCGTGAATGCCTCTCATTCGTCACCAAGGAGGTGAAGCAAGGCACCACCAATGCGGATGTCTACATCCTCCGGGCCAGGCTCTACAACTTCTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013509-'3-6,'3-4,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(46.3=64.6),PF134141=TPR_11=PU(12.9=16.7)
A:
PF134141=TPR_11=FE(53.2=100)
C2:
PF134141=TPR_11=PD(30.6=43.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGCCTTAAGAGCCGAGGC
R:
AGAAGTTGTAGAGCCTGGCCC
Band lengths:
258-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]