DreEX0009127 @ danRer10
Exon Skipping
Gene
ENSDARG00000104035 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr5:65286026-65289492:-
Coord C1 exon
chr5:65289349-65289492
Coord A exon
chr5:65287761-65287861
Coord C2 exon
chr5:65286026-65286155
Length
101 bp
Sequences
Splice sites
3' ss Seq
TATTATTTTCTTTCCTAAAGGGC
3' ss Score
8.37
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACTCAGTTTTATGTCCAGCGGGCAGAAGCATATCTTCAACTGTGTGACTTTCAGTCTGCAGCACTGGACTACAAACATGCCAGAAGACTAGAACCACAAACTGAGGCCTACCATCAACGACTCGCCTTCATACACTACCTACAG
Seq A exon
GGCCAGTGTCTTTTTGATCTAGGCAACTTTCTGGAGGCTTTAGAGTCCTTCACAAAAGCTGCAGAACTCAAACCCGACTTTCAACCTTATCGTATGAGAAG
Seq C2 exon
CTTAGCTTGTCTGAGCGCCCTGGGTCGTTACTTTGACTGTCTTCGACTGGTCAATAACTGGCTGGAGACGGATGGCCTTTCAGCAGATCTCTTCACTCTGAGAGCTCGCCTTCACCATCAGCTCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104035-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
75%=100=50%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(47.1=65.3),PF0771912=TPR_2=PU(17.6=12.2)
A:
PF0771912=TPR_2=PD(79.4=79.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGGGCAGAAGCATATCTT
R:
ATTGAGCTGATGGTGAAGGCG
Band lengths:
256-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]