HsaINT0174078 @ hg19
Intron Retention
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:26536]
Coordinates
chr9:130479613-130480051:+
Coord C1 exon
chr9:130479613-130479703
Coord A exon
chr9:130479704-130479907
Coord C2 exon
chr9:130479908-130480051
Length
204 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
CTGGGTCCCCTCACCCTCAGGTG
3' ss Score
9.42
Exon sequences
Seq C1 exon
CTACTCCAGAGGCCAGCAGTGCTTGGAGCAGGCAGACTGGGAGACAGCTGTGCTGCTCTTCTCCCGCGCACTCCACCTGGACCCACAGCTG
Seq A exon
GTGAGAGGCAGACCTGGGTGGGCACAGGCAGTTGCTGGAACATGCTTCCTCCCTCCCTGTCGCACCTGCCAGATCCCTCCTCTCAGGGCCACCAAGTCCCTGATGGGAATTGGATGTCAACTCTCAGGGGGGTGGAGACTTTCCCCTACCCTCCAGGGGCAGATGGTGGGGAGGATCTAGCAGCCTGGGTCCCCTCACCCTCAG
Seq C2 exon
GTGGACTTCTATGCCTTACGGGCTGAGGCCTACCTCCAGCTCTGTGACTTCTCCTCGGCCGCCCAGAACCTGCGAAGGGCCTACTCATTACAGCAGGACAACTGCAAGCACCTGGAGCGCCTCACCTTTGTGCTCTACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094-TTC16:NM_144965:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(44.8=100)
A:
NA
C2:
PF134141=TPR_11=PD(46.3=64.6),PF134141=TPR_11=PU(13.1=16.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTCCAGAGGCCAGCAGT
R:
CTGTAGGTAGAGCACAAAGGT
Band lengths:
235-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)