DreEX6014360 @ danRer10
Exon Skipping
Gene
ENSDARG00000104035 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr5:65287761-65289681:-
Coord C1 exon
chr5:65289591-65289681
Coord A exon
chr5:65289349-65289492
Coord C2 exon
chr5:65287761-65287861
Length
144 bp
Sequences
Splice sites
3' ss Seq
TACATTCCCATTACCCACAGACT
3' ss Score
8.11
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
TTATGAAACAGGTATTATTTCCATGGCACATTCTCAGTTTGATAAGGCCGTGTCCTGTTTCTCAAAGGCCATAGTGCTCCAGCCACATAAG
Seq A exon
ACTCAGTTTTATGTCCAGCGGGCAGAAGCATATCTTCAACTGTGTGACTTTCAGTCTGCAGCACTGGACTACAAACATGCCAGAAGACTAGAACCACAAACTGAGGCCTACCATCAACGACTCGCCTTCATACACTACCTACAG
Seq C2 exon
GGCCAGTGTCTTTTTGATCTAGGCAACTTTCTGGAGGCTTTAGAGTCCTTCACAAAAGCTGCAGAACTCAAACCCGACTTTCAACCTTATCGTATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104035-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
86%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(44.1=100)
A:
PF134141=TPR_11=PD(47.1=65.3),PF0771912=TPR_2=PU(17.6=12.2)
C2:
PF0771912=TPR_2=PD(79.4=79.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAACAGGTATTATTTCCATGGCA
R:
TCATACGATAAGGTTGAAAGTCGGG
Band lengths:
186-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]