HsaEX0067784 @ hg38
Exon Skipping
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr9:127717334-127720178:+
Coord C1 exon
chr9:127717334-127717424
Coord A exon
chr9:127717668-127717772
Coord C2 exon
chr9:127720078-127720178
Length
105 bp
Sequences
Splice sites
3' ss Seq
GGGCTGAGGCCTACCTCCAGCTC
3' ss Score
0.63
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
Exon sequences
Seq C1 exon
CTACTCCAGAGGCCAGCAGTGCTTGGAGCAGGCAGACTGGGAGACAGCTGTGCTGCTCTTCTCCCGCGCACTCCACCTGGACCCACAGCTG
Seq A exon
CTCTGTGACTTCTCCTCGGCCGCCCAGAACCTGCGAAGGGCCTACTCATTACAGCAGGACAACTGCAAGCACCTGGAGCGCCTCACCTTTGTGCTCTACCTACAG
Seq C2 exon
GGACAATGCCTTTTTGAGCAGTGTGCCTTCCTGGATGCCCTGAATGTCTTCTCACATGCTGCTGAGCTCCAGCCTGAGAAACCATGCTTCCGTTACCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094-'5-4,'5-3,6-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(44.8=100)
A:
PF134141=TPR_11=PD(46.3=64.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTCCAGAGGCCAGCAGT
R:
GGTAACGGAAGCATGGTTTCTCA
Band lengths:
188-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development