RnoEX0094610 @ rn6
Exon Skipping
Gene
ENSRNOG00000050650 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:RGD Symbol;Acc:2318922]
Coordinates
chr3:11808449-11810353:-
Coord C1 exon
chr3:11810263-11810353
Coord A exon
chr3:11809952-11810095
Coord C2 exon
chr3:11808449-11808549
Length
144 bp
Sequences
Splice sites
3' ss Seq
GGGGGTCTCTTTGCCTTCAGATA
3' ss Score
8.36
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
Exon sequences
Seq C1 exon
CTATAACCAAGGCCATCAGTGCCTATTACAAGAGGACTGGGAGATGGCTGTGCTGTTCTTCTCCCGTGCCCTCCACCTGGACCCCAAACTG
Seq A exon
ATAGACTTCTACGTATATCGTGCTGAGGCCTTCATCCAGCTCTGCGACTTCTCCTCTGCCCTCCAGAACCTCCGCAGGGCCTACTTCTATGAGCCAGAAAATGACAAATACGTGGATCGGCTGGCCTTCGTGCTCTACCTACAG
Seq C2 exon
GGCCAGTGCCTCTATGAGCTGTGTGACTACCAGGAAGCCCTCTATGTCTTCCTGCAAGCCTCCGACCTCCAGCCCCAAAACCCTTCCTTCAGTTACCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050650-'3-6,'3-3,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(44.1=100)
A:
PF134141=TPR_11=PD(45.6=64.6),PF134141=TPR_11=PU(12.5=16.7)
C2:
PF134141=TPR_11=FE(51.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACCAAGGCCATCAGTGCC
R:
CATCGGTAACTGAAGGAAGGGT
Band lengths:
190-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]