RnoEX6016483 @ rn6
Exon Skipping
Gene
ENSRNOG00000050650 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:RGD Symbol;Acc:2318922]
Coordinates
chr3:11804467-11805823:-
Coord C1 exon
chr3:11805579-11805823
Coord A exon
chr3:11805327-11805468
Coord C2 exon
chr3:11804467-11804632
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACCTCGCCCTCGGGTCCTAGATT
3' ss Score
7.46
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
AGGCACCCTGCGCAGACGGCTCCAGCAGTATGACCCAGCTGTGGAAGACTTCCTGAAGGCCCTGGATATGATGACTGAAAGCCAGGACAACCTAGTGAAGCAGGCGCAGCGCCAGCTGCTGCTGACTTACAACGACTTTGCTGTGCACTGCTACCTCCATGGTGCCTATCAGGAGAGTGTGCTGCTGCTAAACAAGGCTATCAGAGACGAGCAGAACGAGAAGGGCCTGTACATCAACCGTGGGG
Seq A exon
ATTGCTTCTACCAGCTGGGCAACCTGGCCTTCGCGGAGGCTGACTACAAGCAAGCACTGGCTCTGAGCCCACTGGATGAAGGAGCGAACTTGCGCATGGGGGTGCTGCAGGAGAAGATGGGCTTCTGCCAGCAGAAGCACAG
Seq C2 exon
GCAGTTCCAGACAGCAGAGGAGCACTTCTCGGAGGCTATAAGGCACAACCCACAGAAGCCCCAGTACTACCTGCACCGGGCCAAGTGCCGACAGTTCCTGCAGAACATACTGGGGGCCCGCCAGGATGTTGCTACTGTGCTGCTCCTGAACCCCAACTATCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050650-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.107
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(35.8=28.9),PF134141=TPR_11=PU(64.7=53.0)
A:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(20.0=27.1)
C2:
PF134141=TPR_11=PD(78.5=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCACTGCTACCTCCATG
R:
GCAGCACAGTAGCAACATCCT
Band lengths:
248-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]