BtaEX6046274 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013509 | TTC16
Description
Bos taurus tetratricopeptide repeat domain 16 (TTC16), mRNA. [Source:RefSeq mRNA;Acc:NM_001102138]
Coordinates
chr11:98415568-98420051:+
Coord C1 exon
chr11:98415568-98415812
Coord A exon
chr11:98416188-98416329
Coord C2 exon
chr11:98419886-98420051
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACTCAGTCCTCGCGCTCCAGATT
3' ss Score
4.24
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGGCACCATGTACCGACGGCTCCAGGATTTTGACTTGGCAGTGGAGGACTTCCTGAAGGCGCTGGACATGATGAGCGACCACCAAGAGGAGCTGGTACAGCAGGCCCAGCGCCAACTGCTGCTGGCCTACAACGATTTCGCGGTGCACTGCTACATGCAGGGAGCCTACCAGGAGAGCGTGCTGCTGCTCAACAAGGCGCTCAAGGACGAGCAGCAGGAGAAAGGCCTCTACATCAACCGCGGCG
Seq A exon
ATTGCTTCTTCCAGCTGGGCAACCTGACCTTTGCTGAGGCGGACTACCAGCAGGCGCTGGCACTGAGTCCGAAGGACGAGGGCGCCCACCTGCGCATGGGCCTGTTGCAGGAGAAGTTGGGCTTCTGCGAGCACCGGAGCAG
Seq C2 exon
GCAGTTCCAGAAGGCAGAGAACCACTTCTCAATGGCCATCCAGCACAATCCCCAGAAGCCCCAGTACTACCTGTACCGTGCCCGGAGCCGGCAGCTCATGCAGAACATTTTTGGGGCCCGCCAGGATGTTGCCACTGTCCTGCTCCTTGACCCCAAGCAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013509-'7-11,'7-9,8-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(36.8=30.1),PF134141=TPR_11=PU(64.7=53.0)
A:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(22.4=31.2)
C2:
PF134141=TPR_11=PD(76.1=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACATGATGAGCGACCAC
R:
AGGTAGTACTGGGGCTTCTGG
Band lengths:
256-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]