BtaEX0039474 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019488 | USP6NL
Description
USP6 N-terminal like [Source:HGNC Symbol;Acc:HGNC:16858]
Coordinates
chr13:12818955-12823027:+
Coord C1 exon
chr13:12818955-12819075
Coord A exon
chr13:12822188-12822282
Coord C2 exon
chr13:12822962-12823027
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTTTATGTTTGTATTCTAGGAT
3' ss Score
12.04
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GAGGTTGGATACTGTCAGGGGATGAGCCAGATCACAGCCTTGCTCCTCATGTATATGAACGAGGAAGATGCCTTCTGGGCCCTGGTCAAGCTGTTCTCAGGTCCCAAACACGCCATGCACG
Seq A exon
GATTTTTTGTCCATGGTTTTCCCAAACTCTTGAGGTTTCAAGAACATCATGAAAAAATACTGAATAAATTTTTGTCCAAGCTTAAGCAGCACTTG
Seq C2 exon
GATTCTCAAGAAGTCTACACAAGTTTTTACACAATGAAATGGTTTTTTCAATGTTTCCTTGATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019488_MULTIEX1-6/9=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(19.0=100)
A:
PF0056613=RabGAP-TBC=FE(14.8=100)
C2:
PF0056613=RabGAP-TBC=FE(10.0=100)
Main Skipping Isoform:
ENSBTAT00000025957fB7662
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTGGATACTGTCAGGGGA
R:
CCATTTCATTGTGTAAAAACTTGTGT
Band lengths:
162-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development