RnoEX0097505 @ rn6
Exon Skipping
Gene
ENSRNOG00000017644 | Usp6nl
Description
USP6 N-terminal like [Source:RGD Symbol;Acc:1311786]
Coordinates
chr17:75778032-75781761:-
Coord C1 exon
chr17:75781641-75781761
Coord A exon
chr17:75778694-75778788
Coord C2 exon
chr17:75778032-75778097
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTGTGTTCTAGGTT
3' ss Score
11.76
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GAGGTCGGGTACTGTCAAGGGATGAGTCAGATCACAGCTCTGCTCCTGATGTACATGAATGAGGAGGACGCCTTCTGGGCCCTGGTCAAGCTCTTCTCAGGCCCCAAGCACGCCATGCATG
Seq A exon
GTTTTTTTGTCCAAGGTTTCCCTAAACTCTTGAGATTTCAAGAACATCATGAGAAAATTCTGAACAAATTTTTGTCCAAACTAAAGCAGCACTTG
Seq C2 exon
GATTCTCAAGAAATCTATACAAGTTTTTACACAATGAAGTGGTTTTTTCAGTGTTTCCTTGACCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017644-'25-20,'25-19,28-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(19.0=100)
A:
PF0056613=RabGAP-TBC=FE(14.8=100)
C2:
PF0056613=RabGAP-TBC=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGTACTGTCAAGGGATGA
R:
TCGGTCAAGGAAACACTGAAA
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]