BtaEX0039890 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021568 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr29:40488105-40491446:-
Coord C1 exon
chr29:40491359-40491446
Coord A exon
chr29:40489415-40489500
Coord C2 exon
chr29:40488105-40488222
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTTTTCCTCCACAGTGA
3' ss Score
12.18
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCTGGAAATGTGTCCTGCATCTCCCCCGAGTGTCCCCCCGACCCCTGCCAGGCCTCCCCGAAGTCGGACTGCTGTACTTGCGTCCCAG
Seq A exon
TGAGATGCTATTTCCACGGCCGGTGGTATGCAGACGGGGCCGTGTTCAGTGGGGGTGGTGATGAGTGTACCACCTGTGTCTGCCAG
Seq C2 exon
AACGGGGAGGTAGAATGTTCCTTCACTCCATGTCCGGAACTGGACTGCCCCCGAGAGGAGTGGTGGCTGGGCCCCGGGCAGTGCTGCTATGCCTGCAGGGAACCCGTGCCCATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021568-'17-17,'17-16,18-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(49.1=90.0)
A:
PF0009313=VWC=PU(44.1=89.7)
C2:
PF0009313=VWC=PD(52.5=77.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTGTCCTGCATCTCCCC
R:
CTGCAGGCATAGCAGCACTG
Band lengths:
181-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development