MmuEX0051681 @ mm10
Exon Skipping
Gene
ENSMUSG00000043789 | Vwce
Description
von Willebrand factor C and EGF domains [Source:MGI Symbol;Acc:MGI:1919018]
Coordinates
chr19:10650561-10654351:+
Coord C1 exon
chr19:10650561-10650648
Coord A exon
chr19:10653050-10653135
Coord C2 exon
chr19:10654234-10654351
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTTTGTCTCCTGCAGGGA
3' ss Score
12.63
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCTGGAAATGTTTCTTGTATCTCTCCCGAGTGTCCCCCTGGTCCCTGCAAGGCTTCCCCACAGTCAGATTGCTGTACTTGTGTTCCAG
Seq A exon
GGAGATGCTATTTCCATGGCCGGTGGTACACGGATGGGGCTGTGTTCAGTGGGGGTGGTGACGACTGTACCACCTGTGTCTGCCAG
Seq C2 exon
AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043789_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(49.1=90.0)
A:
PF0009313=VWC=PU(44.1=89.7)
C2:
PF0009313=VWC=PD(52.5=77.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCTCTCCCGAGTGTCCCC
R:
TGTGGGTTCCCGACAGGTAAA
Band lengths:
180-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types