BtaEX0040677 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016735 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr16:47666882-47669187:-
Coord C1 exon
chr16:47669102-47669187
Coord A exon
chr16:47667812-47668508
Coord C2 exon
chr16:47666882-47667123
Length
697 bp
Sequences
Splice sites
3' ss Seq
GCCGTGTTTCTTCCCTTCAGAGG
3' ss Score
10.67
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
AGGCCGGCGCGCCCTGACGTCACGTCCGGCGGCGGCGACGGCGGCGTCTCTGCACTTTCGCCGGGCACGTACGGCCGGGGGAGTTG
Seq A exon
AGGGACCATGGACGGCTCCTTCGTCCAGCACAGCGTGAGGGTTCTGCAGGAACTCAACAAGCAGCGGGAGAGGGGCCAGTACTGCGATGCCACCCTGGATGTGGGGGGCCTGGTGTTCAAGGCACACTGGAGTGTTCTTGCCTGCTGCAGCCACTTCTTCCAGAGCCTCTACGGGGATGGCTCAGGGGGCAGTGTTGTCCTCCCTGCGGGCTTTGCCGAGATCTTTGGCCTCCTGCTGGATTTTTTCTACACCGGCCACCTCGCCCTCACCTCCGGGAACCGGGATCAGGTGCTCCTGGCAGCCAGGGAGTTGCGAGTGCCAGAGGCTGTGGAGTTGTGCCAGAGCTTCAAGCCCAAAGCCTCGGTGGGACAGCCACCAAGTGGCCAGAGTGGGCTTGGGAAATCTGCCCCCCGGGATGTGAACAGCCACCTCAAGGAGTCTGCGGGTGTGGAGAAGGAGGAAGTTTCAAGGACTCTGGGTCAAATCCCCAGGGATCCGGAGCTAAGCGGTAGTCTCAGCCCCCAGAGGCCCCGGCTTGGCCTCCCTGCTCAGAGTGAGAGCCCGTCCTTTCTCCGTGGGAAACTCAAGCAGGCCCTGAAGCTCTGTCCCCCTGGGGACAAGGAGCCTGAGGATTGCAAAGTGCCCCCAAGGCCCTTCGAAGCTGAAGGTGTCCAGCTGCAGGGCGGGACTAATGAG
Seq C2 exon
TGGGAGGTGGTGGTTCAAGTTGAGGACGACGGGGATGGCGATTATGATTCTGAAACTGAGACTGTGCCAACCAAGAGGAAAGCAAACGTAATCAGAAAGCCTTGTGCTGCTGAGCCGGCCCGGAGCGTAGGTTCCCTGGCAGCCGAGCCTGCTGAGAACAGAAAAGGTACAGCGGTGCCAGTTGAATGCCCCACATGTCATAAAAAGTTCCTCAGCAAATATTACCTAAAAGTCCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016735_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.470 C2=0.519
Domain overlap (PFAM):
C1:
NA
A:
PF0065126=BTB=WD(100=45.2)
C2:
PF134651=zf-H2C2_2=PU(24.0=7.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCGTCTCTGCACTTTC
R:
GTTGTGGACTTTTAGGTAATATTTGC
Band lengths:
286-983
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development