BtaEX0040893 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020053 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11642]
Coordinates
chr13:34114899-34141322:-
Coord C1 exon
chr13:34141222-34141322
Coord A exon
chr13:34120653-34120823
Coord C2 exon
chr13:34114899-34115099
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTCTGCCATGCAGATG
3' ss Score
10.63
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
TAAAGAGCTGTGAATAATAGGTATTGGAACTTGACAGCTTCTGGTGTGCTAAACTTGTGTTAGAACGTTCATGCTGCTCACAAGGAATTTCTTTTTCTAAG
Seq A exon
ATGTGTGTGTTTGGGGATTGGTGAAGGAGTGGAATGTAGTTCAGCATGATGTACTTCTCCTCTGGAAGGAAAAATGCCTTTGTACATCAGAAAATATGTCAAAACGTGGCCTTTGCCTGTGGCTTTAATCAACACATGCCACTGCTGTAACCTGACAGGAACCGAAGACCT
Seq C2 exon
TTACAAATTATAATACTGTGGTAGAAACAAACTCAGATTCAGACGATGAAGACAAACTCCACATTGTGGAAGAAGAAAGCATCACAGATGCAGCCGACTGTGAAGGCGGCGTGCCAGACGATGACCTGCCCTCAGACCAGACAGTGTTGCCCGGGAGCAGCGCAAGAGAAGGGAGCGCAAAGAGCTGCTGGGAGGACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020053-'9-9,'9-8,10-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACTTGACAGCTTCTGGTG
R:
TTTGCGCTCCCTTCTCTTGC
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development