BtaEX0040896 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020053 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11642]
Coordinates
chr13:34114899-34261299:-
Coord C1 exon
chr13:34261244-34261299
Coord A exon
chr13:34195150-34195289
Coord C2 exon
chr13:34114899-34115099
Length
140 bp
Sequences
Splice sites
3' ss Seq
GACTCTCCTCTTCTCTTCAGGAA
3' ss Score
10.37
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGCGGATGGCCCCAGGTGTAAGCGCAGAAAGCAGGCGAACCCGCGGCGCAATAACG
Seq A exon
GAAAATCTTAAACTTCACCACCAGAAGATTAAAAAGAGGTCCCTCCTGCACCGGGAAGGCTCTGCAGGTCTTTTCAGTGTTCTTGGAGGTGTGGGCTGTGAGCCCTGGTCACTTTGTGTCATCCTCCTTGTTCTCTAAAG
Seq C2 exon
TTACAAATTATAATACTGTGGTAGAAACAAACTCAGATTCAGACGATGAAGACAAACTCCACATTGTGGAAGAAGAAAGCATCACAGATGCAGCCGACTGTGAAGGCGGCGTGCCAGACGATGACCTGCCCTCAGACCAGACAGTGTTGCCCGGGAGCAGCGCAAGAGAAGGGAGCGCAAAGAGCTGCTGGGAGGACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020053_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGTGTAAGCGCAGAAAG
R:
GTCCTCCCAGCAGCTCTTTG
Band lengths:
243-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development