MmuEX0052956 @ mm9
Exon Skipping
Gene
ENSMUSG00000024238 | Zeb1
Description
zinc finger E-box binding homeobox 1 [Source:MGI Symbol;Acc:MGI:1344313]
Coordinates
chr18:5591858-5705241:+
Coord C1 exon
chr18:5591858-5591965
Coord A exon
chr18:5641380-5641516
Coord C2 exon
chr18:5705041-5705241
Length
137 bp
Sequences
Splice sites
3' ss Seq
ACTCTTCTCTCCTCCTTCAGGAT
3' ss Score
12.6
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGGAGGGAGGGAGGAGGTGACTCGAGCATTTAGACACAAGCGAGAGGATCATGGCGGATGGCCCCAGGTGTAAGCGCAGAAAGCAGGCGAACCCGCGGCGCAATAACG
Seq A exon
GATAATCTTAAGCTTCCACCACAAGAAGACTGTAGAGGTCCCTCCCGCACCAAGAACCTCCTGCAGATCTTTTTCAGTGTTCTTGGAGGTGGGCTGAGAGCTCGATCAGTTTGTGTCAGCCACCTTGTTCTCTAAAG
Seq C2 exon
TTACAAATTATAATACTGTGGTAGAAGCAAATTCAGATTCCGATGATGAAGACAAACTCCATATTGTGGAAGAAGAAAGTATTACAGATGCAGCTGACTGTGAAGGTGGCATGCCAGATGATGAACTGCCAGCAGACCAGACAGTATTACCAGGAGGCAGTGACAGGGGGGGCGGTGCCAAGAACTGCTGGCAAGACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024238_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.966
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGTAAGCGCAGAAAGCA
R:
TGTCTTGCCAGCAGTTCTTGG
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: