MmuEX0020647 @ mm9
Exon Skipping
Gene
ENSMUSG00000063087 | Gm10125
Description
predicted gene 10125 [Source:MGI Symbol;Acc:MGI:3642044]
Coordinates
chr18:5540604-5592435:-
Coord C1 exon
chr18:5592158-5592435
Coord A exon
chr18:5583010-5583131
Coord C2 exon
chr18:5540604-5540676
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTCTTTTGTTTTTAGCTC
3' ss Score
10.3
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
AGCCGACACGCAACCAGCCCGCGGCCGCCCGTCCTCTCCCGCCCGCGCCCGCCCCGCAGCCCGCGCCCGCCCGCCGCAAGTTTGTTCCCCGCCGCTGCGGCCTGCGCGGAGAGAGGATCGCGCGCGGGGAGGCGCCGAGGGGCAGCAAGAGTGGAGAAAGTGCGGAAAGAAGCAACAGCCGCTCCACCCGCGGGCGGAAAAGTGGCCGGGCGCGGCGGCGGGATGCGGCGCAGCTAACGGTCCCCGGCGGCCGCCGGAGCCGCTAGGCGCAGAGGCAG
Seq A exon
CTCACAAGTGTAGGGCTGGAGCTACAGGAACCATCCAGGTGCACTGGCTTGGCCTCTGCATCTTTCTGTGCCACTGTCTCATTCTGTTTCCGGCTGTGCGTGGATGCGGATGGCCCAGAGAG
Seq C2 exon
CATGGAAGGGGAATAAACTGGACTGGACTTCCTGTCCACCCTCTACAACTAACAAGGACCTTTGGTGATCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063087-'0-4,'0-1,2-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.888 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083957=7tm_7=PU(41.0=82.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTTGTTCCCCGCCGC
R:
TGTAGAGGGTGGACAGGAAGT
Band lengths:
248-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: