MmuEX0020649 @ mm9
Exon Skipping
Gene
ENSMUSG00000063087 | Gm10125
Description
predicted gene 10125 [Source:MGI Symbol;Acc:MGI:3642044]
Coordinates
chr18:5583010-5592391:-
Coord C1 exon
chr18:5592158-5592391
Coord A exon
chr18:5583711-5583794
Coord C2 exon
chr18:5583010-5583131
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTTTGTGACACATAGGCT
3' ss Score
6.61
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GCGCCCGCCCCGCAGCCCGCGCCCGCCCGCCGCAAGTTTGTTCCCCGCCGCTGCGGCCTGCGCGGAGAGAGGATCGCGCGCGGGGAGGCGCCGAGGGGCAGCAAGAGTGGAGAAAGTGCGGAAAGAAGCAACAGCCGCTCCACCCGCGGGCGGAAAAGTGGCCGGGCGCGGCGGCGGGATGCGGCGCAGCTAACGGTCCCCGGCGGCCGCCGGAGCCGCTAGGCGCAGAGGCAG
Seq A exon
GCTGGCACCTGTGCAGTGGGAGAGAGTTCTTGTCACTGGTGACTCATCGTGCAGGGAGCACAAGGAAGAGCAAGGGGATAGTGT
Seq C2 exon
CTCACAAGTGTAGGGCTGGAGCTACAGGAACCATCCAGGTGCACTGGCTTGGCCTCTGCATCTTTCTGTGCCACTGTCTCATTCTGTTTCCGGCTGTGCGTGGATGCGGATGGCCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063087_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=0.035 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083957=7tm_7=PU(41.0=82.9)
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGCAAGAGTGGAGAAAG
R:
TTCCTGTAGCTCCAGCCCTAC
Band lengths:
169-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: