MmuEX0020649 @ mm10
Exon Skipping
Gene
ENSMUSG00000063087 | Gm10125
Description
predicted gene 10125 [Source:MGI Symbol;Acc:MGI:3642044]
Coordinates
chr18:5583012-5592382:-
Coord C1 exon
chr18:5592160-5592382
Coord A exon
chr18:5583713-5583796
Coord C2 exon
chr18:5583012-5583133
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTTTGTGACACATAGGCT
3' ss Score
6.61
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GCAGCCCGCGCCCGCCCGCCGCAAGTTTGTTCCCCGCCGCTGCGGCCTGCGCGGAGAGAGGATCGCGCGCGGGGAGGCGCCGAGGGGCAGCAAGAGTGGAGAAAGTGCGGAAAGAAGCAACAGCCGCTCCACCCGCGGGCGGAAAAGTGGCCGGGCGCGGCGGCGGGATGCGGCGCAGCTAACGGTCCCCGGCGGCCGCCGGAGCCGCTAGGCGCAGAGGCAG
Seq A exon
GCTGGCACCTGTGCAGTGGGAGAGAGTTCTTGTCACTGGTGACTCATCGTGCAGGGAGCACAAGGAAGAGCAAGGGGATAGTGT
Seq C2 exon
CTCACAAGTGTAGGGCTGGAGCTACAGGAACCATCCAGGTGCACTGGCTTGGCCTCTGCATCTTTCTGTGCCACTGTCTCATTCTGTTTCCGGCTGTGCGTGGATGCGGATGGCCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063087_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGCAAGAGTGGAGAAAG
R:
TTCCTGTAGCTCCAGCCCTAC
Band lengths:
169-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types