MmuEX1028330 @ mm10
Exon Skipping
Gene
ENSMUSG00000024238 | Zeb1
Description
zinc finger E-box binding homeobox 1 [Source:MGI Symbol;Acc:MGI:1344313]
Coordinates
chr18:5591860-5705243:+
Coord C1 exon
chr18:5591860-5591967
Coord A exon
chr18:5593713-5593919
Coord C2 exon
chr18:5705043-5705243
Length
207 bp
Sequences
Splice sites
3' ss Seq
TGCCATGAATGATTTTTCAGTTG
3' ss Score
6.08
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGGAGGGAGGGAGGAGGTGACTCGAGCATTTAGACACAAGCGAGAGGATCATGGCGGATGGCCCCAGGTGTAAGCGCAGAAAGCAGGCGAACCCGCGGCGCAATAACG
Seq A exon
TTGTTCAGATAAACGTTGCATTTCGGAGAAGCCTGCTCGTTCTTTCGAAGGGAAAGGTGTGTTGGTAGCGTCATTGTGGAGAGGTGACTGGTTGTGGCAAGGACCTGAGCACAGACTACCGCAATTGTAATTTCCTGCTTCTAGCGTCAAATAGTGTCTGTTCTACATTGAGCTGTTGCTGCTATTGCTGATGTGGCTTTATGAAAG
Seq C2 exon
TTACAAATTATAATACTGTGGTAGAAGCAAATTCAGATTCCGATGATGAAGACAAACTCCATATTGTGGAAGAAGAAAGTATTACAGATGCAGCTGACTGTGAAGGTGGCATGCCAGATGATGAACTGCCAGCAGACCAGACAGTATTACCAGGAGGCAGTGACAGGGGGGGCGGTGCCAAGAACTGCTGGCAAGACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024238_MULTIEX1-1/9=C1-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=0.058 C2=0.973
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000025081fB19803
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGAGGGAGGAGGTGAC
R:
TGTCTTGCCAGCAGTTCTTGG
Band lengths:
304-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types