MmuINT0069648 @ mm10
Intron Retention
Gene
ENSMUSG00000063087 | Gm10125
Description
predicted gene 10125 [Source:MGI Symbol;Acc:MGI:3642044]
Coordinates
chr18:5583012-5592382:-
Coord C1 exon
chr18:5592160-5592382
Coord A exon
chr18:5583134-5592159
Coord C2 exon
chr18:5583012-5583133
Length
9026 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTTTGTCTTTTGTTTTTAGCTC
3' ss Score
10.3
Exon sequences
Seq C1 exon
GCAGCCCGCGCCCGCCCGCCGCAAGTTTGTTCCCCGCCGCTGCGGCCTGCGCGGAGAGAGGATCGCGCGCGGGGAGGCGCCGAGGGGCAGCAAGAGTGGAGAAAGTGCGGAAAGAAGCAACAGCCGCTCCACCCGCGGGCGGAAAAGTGGCCGGGCGCGGCGGCGGGATGCGGCGCAGCTAACGGTCCCCGGCGGCCGCCGGAGCCGCTAGGCGCAGAGGCAG
Seq A exon
GTAAGACATAACGGTCCAGTCCAGCAGCCGCGGCGGCGGCGGCAGCGGCGGCGGCAGCGGCAGCGGGGCGCACTACTTTACTTTCCCACTCTACTCGGCCCGGCCCCGCCGCCGCCCCCGGCCCGCTTGGCCCTGCGCCCCTCGCCCGGCCGCCCGCTGCCCGCCGCCGCACCGGGCCCCTCCGCCACTCACCGTTATTGCGCCGCGGGTTCGCCTGCTTTCTGCGCTTACACCTGGGGCCATCCGCCATGATCCTCTCGCTTGTGTCTAAATGCTCGAGTCACCTCCTCCCTCCCTCCCTCCCTCCCTCCCCTTCCCCCCCCCACCCGCGGCCTCCACCCCTCCCCCTCCCCACCGCACCTGGTTTACGACACTCGAGGCTTTACGACATCACCTTCCTAACACCTAGCGGCGCTCGCTCTACGGCCGGAACCTTGTTGCTAGGGCCGGGGTGGTTTGCGGCAGCCTTGGACGCTGCAGAGTTTGAATCTTGAAGGCGAGGGAAAAGTTTTGCTCAGGTGTGGTGGAGTAGCGGAGAATAGTGCTGGGGCTCTGGGGACAGGAATGGGAGGCGACAGCGTGGCTTCCTAGGCCAGGTTGAGCTGGCGGCATGGGCCACACCCGCTCATCCCCCACGCAGACGAGTTGCGCACTTTGCGGAGACCCGCGCGCTCCTGCTGTTGGTGCGGCGACCCGCACGTGCGCGCCGGGGACGTGGACAGCCGGGACGCGTCGCTCGCGAGCTACCTGGCTCGTTCTGCTGCCTTCCTCCCCTCCCACGGACGCGCGGGTTTCCCCAGCCTACCCGGACGGGAAGTGACTGCAGTTAGGTTGAACTTCAGCAGGACAGAGAGGCCCGCAAGAAATTCCGCTCACAGGAAAGCAGCATGAGTAATCCCCCGCACGGTGCCAGCGCCTAGATCACCTGTCACCCTGCCTATCCTATCCTGCAGGATCCCAGGGTGGCCATACTCAGGGTTGTAGTGACTTGCCATTGAGGCATAACCTGTAACCCGAAAAGTCAGGAGCCTGAGGCAGGAGGATGTCTGAGAGTTTGGGCTACAGAGTGGAACCCTGTCTCAAAATAACTAAATTTTACACTTATCTGAGCAGTTGTCGCACTGGGAGGGCCTCAAAGCTAAAAGCAAGGGTTACTAATGTGGGCTGACGCTGGTTTTTATCTTAAGTCCTTCGACTTTGTTCAAGACCCAAAATACCTTGATACCTGTTTTCAGAAATAGGGACTTAAGTTGACCCTTCTCCCCCTGCTTCCCACCCCTTTTCAAAGGAGGAATTATGTGGGACCACTCTATGAGATAAATGAACTAAGCCATTGTTTCATATATGTAGTTATTGTATTGTTTTTATGGATAGAGATAACATACCATAAACATGCCTTATAATGTAAGAAATACTACATTAAATCAGCACAGTATGGATAAATGACACCTGCTGGTAGGTTTCTGCCTACGGAGTCTGCCATACCCAAGGAAGGGTTTTTTTATGGCGATACACACCAGCAGTCTTTAAATGTGGGAGGTGGAGGCAGGAAGGTCACACGTACCAAGCCAACTTTGATTTGTATAGTGAGACCCTGTCTGTAAAAACAAACAGCACCAACCATGAGATGTTAAAGATTCATTAAACGTAAGTAAGTGTACAGCCAGAGTCCAGTAATTAAAAAGTGCTGGCTATAGATTAAACCCTTCCCACATTTGCTGTGTCTGAATAATAGGACTATACATGTAGTTTGCATATCAGATCTGTTCACTGCAAAACTAGACTTTTTCTTGGTCTAGTTCATACAGGCAGTGCTTCTTCAGTACTGTGTTCACTGAAACATACGTGTTAGAATCGTGTCCTCAGATTTGTGGCCTTGAATCACCATGTGTGATTTAGTCCTTGGCATCTTGAGTACCTGGCATTACTCAAATGAGCCATGGCCAGGCCTCTGTGACTTTCTGAATCACATCATAAACTTTTGTCTTTTACTGGAAATTGTCTAGTTTCCAGCCAAAAAGAAAAGAAAATGTTCTCTCTACCACAATTTTACCTTCCCTTAAACTTGGAGGGGTCACACTTTCAGTTCTTTTCCTGGCTTGTGAACACTTCTGTGTTATTCCTCAGCCTAACAATCATGGACACACAAACAGCCCAGAAGAAACTTAGTTCCTTCTGTGCTTACAGATGTAGTTGGGCTGGGCTGCAGTATTAACTATGGGGACAGTAACCTTTCCGTGGGATTGTCTGTATCCTCAGCACCTACCAGAGTGCTTAACCGCCTTGTAAAGTTTAATAAATATTTCTGGAATAGGTTTTGTCTAAGTTTCCTGAACCTGTTCTTATCAATAAAGTAAAGGTTGTGTGCCTTACTTTATCATCGTTTCCGGAACTGTTAAGGTGAGTGAAGCCCTGTAGCTACCATCCATGGCCTTTCTAGACCGTAAGCTCTCCGTTTTCATTTTCCTTTTCCCTAAGGCATTACTTCTGCTCAGTTTGATTTTTAAAATACATCCAGGAAATACTGGTGAGCCAAATCTACACAAAGTTTCACTTTCACAAAAACCTTTGATAATTTACAAATTAAATATTTGGCTTCTGTTCGTATTTCTATAATGTTATTGAAGATATTTGAAATCTTTGCTAGAGAGAGCAGACAGAAGTAAGTCTCAGAATATAGAACACTGCTTAAAACTTTATTCTATGTGACAGCTTTATCTTAACCAAAGAATGGGGAAAATCTTTGGAATCAAGTTATAAAGGAAATACATATTAAAATTTAGACTAAATCCAGCCCTTGGGAGGTAGATAAAGGAGGATCAGAAGTTCAAGAAAATCCTTGGCTATATACTGAGTTCCATGACAGCCTGGGCTACGGGAGATGCTGTTTCAAAATAAGAATAGGTAGAAGGGCTAAGGAGGCCAGTGAGTTTAACTTGCATCATGTCTTGTTTGCAGTGACTGGTGTATCACAGAACATGCCTTCAGTTTGTGCATTTGTTAGCGGGATGTTGACACTGCTTTGGGTACTAGGATTGTATATGTTGAGCAAGATATACTGTAACATGTGGATTGCTGTATTTTCAAAATTTAATGGGAAGATGTAAGTGTATCCATCCGATTCTGAATTTTCTATACAATTTTCATACCCTATGCACACACTTGCTTTTCATGTAAGACTGGCTTACAAGTCAGGATAAGCTCTGATAGATGACTATTTTGAAGTTACTGGGTGTTTTGTATCAAGGCCACCTCACTGTCCAAGTACATTTGAGATGTATGACTATGGTTCTCTAGGTAATGTCATGGAAGACTCCTCTGCCAGTGCTTCCTCTCCATCCAGTGCCTGTTTCACATTAGACCTTTGAAGGAGAGTGTTCTCCATACATGTTCCCTGGGGTTTCCATTGCTGATAAAGTACCATGACCAAAGGCAACTTGGAGGATATTCTAGTTACTGTTCTGTTGCCGTGAAGAGACATCTACTGACTAAGGTAGTTTTTATAAAAGAAAGCATTTAACTGAGGGCTTGCTTACAGTTTCAGAGGGTTAGTGCATGATCATCATTGGAGAAAGCAGGCAACCATGCGCTTAGAGCAGTAGCTAAGAGTTTTATATGCTGATTGCAGGCAGAGAGTGACTCTATGTGGGCATAGGCTTTTTAAACCTTAAAGCACACTTTCGGTGACATACCTCCTCCCACAGGCCACACCCCCTAGTCCTTCCCAAATATTTCCACTTGAACATGACTGAGCATTCAAATATATGAACCTGTGGGAGCCATTGTTATTCTAACCCCACCAGGAATGAAAGGATTTATTCAAGCTTGCCAGTCTCAAATCAGATTTTTATTACTGAAGGAAGCCAGGGCAGGAGCCTGCAAATAGGGATTGTTGCAGAGGCCATGGCAGGAGTGCTGCTTACTGGCTTGATCCTCATGGCTTGCTTAGCCTGCTTTCTTATAGCATTTAGGACCACCATCCTAGGAATGACACTGCCCACAGTGGGCTCACATGTTGGTCATCAATTAGGAAAATATACTACAAGTCACTCTGGTGGGGGGCATTTTCTCAGTTGAGGCTCCCTCCTCTCAAATGACTCTAGCTTGTGTCTGGTTGACAAAAAAAAAAAAAAAAAAATGACCAGAACACATTTTTTAAAAAAATGCAGGGGCCCTTCTGAGTTCAAGGCCAATCTAGAGTGAGTTCCAGGGCTATACAGAGAAACCCTGTCTCAGGACCCCCCCCCCCCAAAAAAAAAACAGAAAGAATGCAGGGGCCCTTCAAGCTGCTTCCATGCAATGGCTAAGTTGAGACTGGATCAGTTGTTCATAGTGGGTGAAGCTGGTGGTCATCTCATAGCTGCTGTTCAGCCAGTCTGCAGCCAGACCCTGAAGATGCTTAGCTAGCAGCCCTCCTCAGGGCCTGTGTCAGCTTCACTAATAAAGCCTCCTTGGAGATGACAAAGGACCATGTTTTCCTCATGCCTCCAGGTAACTTTTATTATGTACTGCATCACAAAGCTTCTCTTTAAGGAAAAGCCTCCCACTCTCAATAGAAACCAACACGCTGTTAACAGGCAGGGCTATTAACATAGGTGGCATTCTCAAAACATCTGATATAGAAGCATAAACTTACTTAGGGAGATAGTTGCAAAATGTCATTGATCATCTCCAGAAGCTAATACAATAGTTAATGTGGATTAATTTCAAGAACTGCTCTTAAAGAATGTATCCTTTATTGATACCATGTGTGAACATGAGTGATGTGCTCAGGTGATTGACACCAGAGAGCCCAGCCTGAACAAATGGTTTTGAGTGGACTGTACTTACCACAGTATCAGGGGTCTGGCATTTGGTTTGCATTGCTGTCTTTGCCCCTTTGTTTCTGAGTATGTCTTTGTTTGGCATTTTGAGTTCTCTTAGCAGCTGGCTGATTTTGTTACAGAGTACATCTGTTCTTTGGCTTATACTCCTGGCTTTCTGTAATTCATGGTCTCAGTCACAGGCACTGCTAGCACTTATCTCTTGGAACATATCTAGTTCACAGTTAAAATTTTTAAAAAAGTGAGTAGCCTGTTTTAAATCTTTGACCATTGTGTTAAGGTCACATGAAAAGGTTAGCAGTAGAAACCCATGTTGAGTTACATCCACAACTCTTACGTCCCTGGTCTGACCTCGACCATCCCTTCACCTCTTGCTTCTGGTCCTTTACTGCTTTTCTTTATCTTACATATTGAGGCCACACACTGGGCCACACCCCACTATTTTACTTTTTAGTCATTCTCTTTCTCTTTCTTTGTTCCAGGTCTGACATAGTTCTGTTTGGATCCTTTCCCTTTGTCTTGTAGGCCAAGGTTTTAAAAAGTTGATCCAACTCTAGAGTTGTGCTTGCTCTTGTGGTGATTCCTGGTGTGTCTAGTGAAGCCCAGTCTCTGCCTGGCAGTCCCTGAGGGGCTGCCTTCCAGGGCCCATATTGTCAGGCTCCTTTGCTCGTGTCCCCAGTTCTGTTTGCTTTTGGACAGTTGGAGAAGCCTTGGCAAAAGATTAAAGGAAAGAGCAAGTCCAGAATATTCCCTCCCTGTGGCTACAGCTCCATCTTCAACTAGGGCTATGGATCCTGCCAGATGCCTGTGTCTTGTAGCCAAGTTATAGAAACTGCTTCCCTCCCTGTGCCTTCAGGCCTAGAGACATGATGGTTAGATTCCCTGTCATTCCTTCCCTGAAGAGCTGTGTCCACCTTTGTAAGAACTTTCCTCATTAAACTCCCTTCAGTTACCCCGTCAGCACCACCTGCCAGGACCCTGAAGAATACATAAGTTGGAGTAAGAACTGTTGTGCAACCTGTCAACCAGGAGTCCCAGTTCCATTGCTTCTAAATTGAAATTTGAATGGAGACAAATATCCTAGTGAGTATTCATACAAAATGTCAGACACTAATTATCCCATAAGGATAGAATGAAAGCTCTGTCCTTACCTAAAATCTAGATGAGATAACTTCAGAATAGTTTTTAAAATCAGAGTTTATATGCACTTACAGCACTGATCCTGGGGTGCTTCATAATCTTTGTAAGACAGGACTGTCTGTTCTTACCACGAGGCTATTCCTAGTAATGGCTCTGATTCTCCCTCCTTGCATGTGCCCAGGTGCCACCATGCCACTAGTTCTTCCCAGTGTGATAGAAGCTGAAGTAGTGTGTACAGCTCTGAGGCAGCCTTCACAAGCTATGACTAGCCATTCCTGGGCTTCTCCCTGTTGATTGAAATCAAGCCTACTGTGCCAGGCTCCCAAGGGAAGGCAGAACAAACCTGAAGGGGCAGAGTTCCTGGCAATGAGATAAGGAACCAGCCTGTCTTTCTCTTATAGAGAGAGAGACACCACGGGTAAGCTGCCATTCTCTTAAGATATCTTGGTATTCAGCCAGCAGTACTCCTGTCTAGTGTGCGTGTATGTATTAATGTTCTCTTGCTGCTGTGAAAACACGGACCACCAGTGTATGAAAACCACACTTAATAACTTATCATCCTGGAGGTCTGAAATGGGTATCACAAGGCAAAAAGATTTTCTATTGAGGCTTTTGCAGGATTAGGAACCATCAGAAAACTTTAGAGGGGAACATCTCTTTTCCTTTCCAGCTTTGATGGCCACTCATATTCCTTAGTTCTTGGGCCTCTTTCTCCATCTCCAGACTCATGGACATCTGCAGAGCCTTTCTCCAGTCATCTGCTCTCTGGTTCTTTATGCTACCCCACATGGCAGATGCCTTGGTGATGAATGTAGCCTGCCTAGATAATTGAGGCTGTCTTTCTGCTTTAAGATCAGCTGGTAAGCAAGTTCAGTTTTGCCTGTAACCTTATGTTCCCCTGGGACATGACTAACCGAGTCCTAGCTAACTTTGGTAGGGATTGTATTATACATTGAAAGTTTTGTGATTGAGAAAAAAGGTTTTATTAACTTGTTTAACTTTAATTTTAGTCTTTATCTTTAATTTTTAAGCAGCTTTCCATTATTATGTTAATTAATCGATACTCCTTATGGAACATTTAGCAGTATTGTCACATAGAAATATTTAATTATTAAGAATTAATTATTTTTCTTCAACTTATGTTCCTGAGAGCATTTTATGCGATAGACACAGCATGAATCTATTAATATCTAGCACAGCCCCTGACTTCAAGAAACTTACAGATTGTGGGAGAAGCATATTTGTCAAAAGTCATCATACAAATGGCAGGGGGTGGGGTGGTTATATGTAGGAGACACTAAGGTAGAAGATGTCTGTATTGGAAAGGATGGAGCTTGTCAGAAGTCAAGTGGAGCAGAAATAAATCACAAGATATACAGAATCCCAGGATGAAAGCACAGCCTTCTAGAGTTAAACCTGCAGACGGGAGGGTTTGACTATAAGGAGTTCCTAGTTCTAGGTAAGACTGTCTCAGTGGACAAGTCTGAGACAGGTTATGTGAGTGATGCTATGAGAATTTGGGGTATTGCCTTGGATCTTAAGAGGACTGCATCATACAAGATGTAACTTTGTATTCTGAGAAGGGAAAGTAAGATGAGCAGGAAGAACAATAAGAGGACATTAGCATTTTTCACTAGAATTTAAGAATGAGTTCAAGTAGGAACAGCCACGTGGATGCACATATACCATGAGGATCCCAATGAGTCACAGGTGAGGTCTGCAATCCCAGGCGGTATGAACAAGACATGAGCAAGTATTGCGAAGGAAGCCCAAAGGTAGCCACCAATTCATGCTGTTTTCTGCCTGTGATTTTTGTTCTAATATAGAACCGAGGTCTGCTATCTTCCAGGTTCCTTTTTATGTTCCGAGAAGGCAGATTTCCTTGCTTTGCCTGGACTAAAAGTATCTGTGCCTGTCGAGTATGTCAGAATTCCTGTGACCAGCAAGCAGGCTCCCTCACAGAGCTCATCATTCTTCCACATACCCATAAATGCCTCATTTCACTACAAGTTTTTTAAAAAAAATTATTTCAAATTATGTGGGTGCAGGGCACATGTGTTTACAGGCTTGCAGGTGCTTGTGAAGAGCAGAAGGTGTCAAAACCCCTGGAGCCCCAGTTATAGGTCAAAGTGAGTGCTAGGCACAAAACTAGGGCTCTCTGCAAGGTAGTCCTCCTAACACTAAGCAATTTCTCCAGCCACAAACGCTGAGCTCGCTGAGCTCGTCCTCCAAGTGGTACTGGGGTTGAACCTCGAGCCGCATACATGGCAGGCAAGCACTCACCACCAGCACTGTTATGTGCTTTGCTGTTCTTGTTGCTGTTTTGTTTTGCTTCTGTTGTTTTTTGCTCCAGTCTCTTCCCTTGCTCTGCATTTTTCCTCTTTCCTTTGTGACACATAGGCTGGCACCTGTGCAGTGGGAGAGAGTTCTTGTCACTGGTGACTCATCGTGCAGGGAGCACAAGGAAGAGCAAGGGGATAGTGTGTAAGTTTCCCTGGTGTCTAGCACCGCTGAAAAGAATATCACCCCAGTCACAGGTGGAGTGACCGCATGGAGAGCCAGAGGGGCAGCAGAGCTAACACAGCTGGAGCATTAGCTGCCATGCTGTCTGGGGATGGTAGTGACTTTCAGAGGTGTGCTGTTTGAGGAGTAAATGTCCCACTCTAGGACATTGGATCTTCAACTTCCTAACCCTGCAGCCCTTTACTTCAGTTCAAGTTGTGGTGAGGCCAGCCATAAAGTTAGTTTGTTGCTACTTTATAACTATAATTTTGCTACTATTATGAATTGTAATGTAAATATCTGATATGCAACCCCTATGGGAATCACAACCGAACCACTGATTTAGGACAAACAGCACAATGTGCAGTACAGTGAGCAAGATGGTATGCAGTACTTACCATCCATCTAAGAGTTAAGGATCATAAGAGAAACTCTGAGCTTTTGTTCCTTGGTTTGAATTTCCCAGATACCACTTTAAAAGGCTGACACAAAATGATAAGAATTTATAAAGATAAGAGGTTTTATCATTTTTTGTTTTTACTTTTTGTCTTTTGTTTTTAG
Seq C2 exon
CTCACAAGTGTAGGGCTGGAGCTACAGGAACCATCCAGGTGCACTGGCTTGGCCTCTGCATCTTTCTGTGCCACTGTCTCATTCTGTTTCCGGCTGTGCGTGGATGCGGATGGCCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063087:ENSMUST00000074702:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types