MmuINT0069648 @ mm9
Intron Retention
Gene
ENSMUSG00000063087 | Gm10125
Description
predicted gene 10125 [Source:MGI Symbol;Acc:MGI:3642044]
Coordinates
chr18:5583711-5592435:-
Coord C1 exon
chr18:5592158-5592435
Coord A exon
chr18:5583795-5592157
Coord C2 exon
chr18:5583711-5583794
Length
8363 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTTTCCTTTGTGACACATAGGCT
3' ss Score
6.61
Exon sequences
Seq C1 exon
AGCCGACACGCAACCAGCCCGCGGCCGCCCGTCCTCTCCCGCCCGCGCCCGCCCCGCAGCCCGCGCCCGCCCGCCGCAAGTTTGTTCCCCGCCGCTGCGGCCTGCGCGGAGAGAGGATCGCGCGCGGGGAGGCGCCGAGGGGCAGCAAGAGTGGAGAAAGTGCGGAAAGAAGCAACAGCCGCTCCACCCGCGGGCGGAAAAGTGGCCGGGCGCGGCGGCGGGATGCGGCGCAGCTAACGGTCCCCGGCGGCCGCCGGAGCCGCTAGGCGCAGAGGCAG
Seq A exon
GTAAGACATAACGGTCCAGTCCAGCAGCCGCGGCGGCGGCGGCAGCGGCGGCGGCAGCGGCAGCGGGGCGCACTACTTTACTTTCCCACTCTACTCGGCCCGGCCCCGCCGCCGCCCCCGGCCCGCTTGGCCCTGCGCCCCTCGCCCGGCCGCCCGCTGCCCGCCGCCGCACCGGGCCCCTCCGCCACTCACCGTTATTGCGCCGCGGGTTCGCCTGCTTTCTGCGCTTACACCTGGGGCCATCCGCCATGATCCTCTCGCTTGTGTCTAAATGCTCGAGTCACCTCCTCCCTCCCTCCCTCCCTCCCTCCCCTTCCCCCCCCCACCCGCGGCCTCCACCCCTCCCCCTCCCCACCGCACCTGGTTTACGACACTCGAGGCTTTACGACATCACCTTCCTAACACCTAGCGGCGCTCGCTCTACGGCCGGAACCTTGTTGCTAGGGCCGGGGTGGTTTGCGGCAGCCTTGGACGCTGCAGAGTTTGAATCTTGAAGGCGAGGGAAAAGTTTTGCTCAGGTGTGGTGGAGTAGCGGAGAATAGTGCTGGGGCTCTGGGGACAGGAATGGGAGGCGACAGCGTGGCTTCCTAGGCCAGGTTGAGCTGGCGGCATGGGCCACACCCGCTCATCCCCCACGCAGACGAGTTGCGCACTTTGCGGAGACCCGCGCGCTCCTGCTGTTGGTGCGGCGACCCGCACGTGCGCGCCGGGGACGTGGACAGCCGGGACGCGTCGCTCGCGAGCTACCTGGCTCGTTCTGCTGCCTTCCTCCCCTCCCACGGACGCGCGGGTTTCCCCAGCCTACCCGGACGGGAAGTGACTGCAGTTAGGTTGAACTTCAGCAGGACAGAGAGGCCCGCAAGAAATTCCGCTCACAGGAAAGCAGCATGAGTAATCCCCCGCACGGTGCCAGCGCCTAGATCACCTGTCACCCTGCCTATCCTATCCTGCAGGATCCCAGGGTGGCCATACTCAGGGTTGTAGTGACTTGCCATTGAGGCATAACCTGTAACCCGAAAAGTCAGGAGCCTGAGGCAGGAGGATGTCTGAGAGTTTGGGCTACAGAGTGGAACCCTGTCTCAAAATAACTAAATTTTACACTTATCTGAGCAGTTGTCGCACTGGGAGGGCCTCAAAGCTAAAAGCAAGGGTTACTAATGTGGGCTGACGCTGGTTTTTATCTTAAGTCCTTCGACTTTGTTCAAGACCCAAAATACCTTGATACCTGTTTTCAGAAATAGGGACTTAAGTTGACCCTTCTCCCCCTGCTTCCCACCCCTTTTCAAAGGAGGAATTATGTGGGACCACTCTATGAGATAAATGAACTAAGCCATTGTTTCATATATGTAGTTATTGTATTGTTTTTATGGATAGAGATAACATACCATAAACATGCCTTATAATGTAAGAAATACTACATTAAATCAGCACAGTATGGATAAATGACACCTGCTGGTAGGTTTCTGCCTACGGAGTCTGCCATACCCAAGGAAGGGTTTTTTTATGGCGATACACACCAGCAGTCTTTAAATGTGGGAGGTGGAGGCAGGAAGGTCACACGTACCAAGCCAACTTTGATTTGTATAGTGAGACCCTGTCTGTAAAAACAAACAGCACCAACCATGAGATGTTAAAGATTCATTAAACGTAAGTAAGTGTACAGCCAGAGTCCAGTAATTAAAAAGTGCTGGCTATAGATTAAACCCTTCCCACATTTGCTGTGTCTGAATAATAGGACTATACATGTAGTTTGCATATCAGATCTGTTCACTGCAAAACTAGACTTTTTCTTGGTCTAGTTCATACAGGCAGTGCTTCTTCAGTACTGTGTTCACTGAAACATACGTGTTAGAATCGTGTCCTCAGATTTGTGGCCTTGAATCACCATGTGTGATTTAGTCCTTGGCATCTTGAGTACCTGGCATTACTCAAATGAGCCATGGCCAGGCCTCTGTGACTTTCTGAATCACATCATAAACTTTTGTCTTTTACTGGAAATTGTCTAGTTTCCAGCCAAAAAGAAAAGAAAATGTTCTCTCTACCACAATTTTACCTTCCCTTAAACTTGGAGGGGTCACACTTTCAGTTCTTTTCCTGGCTTGTGAACACTTCTGTGTTATTCCTCAGCCTAACAATCATGGACACACAAACAGCCCAGAAGAAACTTAGTTCCTTCTGTGCTTACAGATGTAGTTGGGCTGGGCTGCAGTATTAACTATGGGGACAGTAACCTTTCCGTGGGATTGTCTGTATCCTCAGCACCTACCAGAGTGCTTAACCGCCTTGTAAAGTTTAATAAATATTTCTGGAATAGGTTTTGTCTAAGTTTCCTGAACCTGTTCTTATCAATAAAGTAAAGGTTGTGTGCCTTACTTTATCATCGTTTCCGGAACTGTTAAGGTGAGTGAAGCCCTGTAGCTACCATCCATGGCCTTTCTAGACCGTAAGCTCTCCGTTTTCATTTTCCTTTTCCCTAAGGCATTACTTCTGCTCAGTTTGATTTTTAAAATACATCCAGGAAATACTGGTGAGCCAAATCTACACAAAGTTTCACTTTCACAAAAACCTTTGATAATTTACAAATTAAATATTTGGCTTCTGTTCGTATTTCTATAATGTTATTGAAGATATTTGAAATCTTTGCTAGAGAGAGCAGACAGAAGTAAGTCTCAGAATATAGAACACTGCTTAAAACTTTATTCTATGTGACAGCTTTATCTTAACCAAAGAATGGGGAAAATCTTTGGAATCAAGTTATAAAGGAAATACATATTAAAATTTAGACTAAATCCAGCCCTTGGGAGGTAGATAAAGGAGGATCAGAAGTTCAAGAAAATCCTTGGCTATATACTGAGTTCCATGACAGCCTGGGCTACGGGAGATGCTGTTTCAAAATAAGAATAGGTAGAAGGGCTAAGGAGGCCAGTGAGTTTAACTTGCATCATGTCTTGTTTGCAGTGACTGGTGTATCACAGAACATGCCTTCAGTTTGTGCATTTGTTAGCGGGATGTTGACACTGCTTTGGGTACTAGGATTGTATATGTTGAGCAAGATATACTGTAACATGTGGATTGCTGTATTTTCAAAATTTAATGGGAAGATGTAAGTGTATCCATCCGATTCTGAATTTTCTATACAATTTTCATACCCTATGCACACACTTGCTTTTCATGTAAGACTGGCTTACAAGTCAGGATAAGCTCTGATAGATGACTATTTTGAAGTTACTGGGTGTTTTGTATCAAGGCCACCTCACTGTCCAAGTACATTTGAGATGTATGACTATGGTTCTCTAGGTAATGTCATGGAAGACTCCTCTGCCAGTGCTTCCTCTCCATCCAGTGCCTGTTTCACATTAGACCTTTGAAGGAGAGTGTTCTCCATACATGTTCCCTGGGGTTTCCATTGCTGATAAAGTACCATGACCAAAGGCAACTTGGAGGATATTCTAGTTACTGTTCTGTTGCCGTGAAGAGACATCTACTGACTAAGGTAGTTTTTATAAAAGAAAGCATTTAACTGAGGGCTTGCTTACAGTTTCAGAGGGTTAGTGCATGATCATCATTGGAGAAAGCAGGCAACCATGCGCTTAGAGCAGTAGCTAAGAGTTTTATATGCTGATTGCAGGCAGAGAGTGACTCTATGTGGGCATAGGCTTTTTAAACCTTAAAGCACACTTTCGGTGACATACCTCCTCCCACAGGCCACACCCCCTAGTCCTTCCCAAATATTTCCACTTGAACATGACTGAGCATTCAAATATATGAACCTGTGGGAGCCATTGTTATTCTAACCCCACCAGGAATGAAAGGATTTATTCAAGCTTGCCAGTCTCAAATCAGATTTTTATTACTGAAGGAAGCCAGGGCAGGAGCCTGCAAATAGGGATTGTTGCAGAGGCCATGGCAGGAGTGCTGCTTACTGGCTTGATCCTCATGGCTTGCTTAGCCTGCTTTCTTATAGCATTTAGGACCACCATCCTAGGAATGACACTGCCCACAGTGGGCTCACATGTTGGTCATCAATTAGGAAAATATACTACAAGTCACTCTGGTGGGGGGCATTTTCTCAGTTGAGGCTCCCTCCTCTCAAATGACTCTAGCTTGTGTCTGGTTGACAAAAAAAAAAAAAAAAAAATGACCAGAACACATTTTTTAAAAAAATGCAGGGGCCCTTCTGAGTTCAAGGCCAATCTAGAGTGAGTTCCAGGGCTATACAGAGAAACCCTGTCTCAGGACCCCCCCCCCCCAAAAAAAAAACAGAAAGAATGCAGGGGCCCTTCAAGCTGCTTCCATGCAATGGCTAAGTTGAGACTGGATCAGTTGTTCATAGTGGGTGAAGCTGGTGGTCATCTCATAGCTGCTGTTCAGCCAGTCTGCAGCCAGACCCTGAAGATGCTTAGCTAGCAGCCCTCCTCAGGGCCTGTGTCAGCTTCACTAATAAAGCCTCCTTGGAGATGACAAAGGACCATGTTTTCCTCATGCCTCCAGGTAACTTTTATTATGTACTGCATCACAAAGCTTCTCTTTAAGGAAAAGCCTCCCACTCTCAATAGAAACCAACACGCTGTTAACAGGCAGGGCTATTAACATAGGTGGCATTCTCAAAACATCTGATATAGAAGCATAAACTTACTTAGGGAGATAGTTGCAAAATGTCATTGATCATCTCCAGAAGCTAATACAATAGTTAATGTGGATTAATTTCAAGAACTGCTCTTAAAGAATGTATCCTTTATTGATACCATGTGTGAACATGAGTGATGTGCTCAGGTGATTGACACCAGAGAGCCCAGCCTGAACAAATGGTTTTGAGTGGACTGTACTTACCACAGTATCAGGGGTCTGGCATTTGGTTTGCATTGCTGTCTTTGCCCCTTTGTTTCTGAGTATGTCTTTGTTTGGCATTTTGAGTTCTCTTAGCAGCTGGCTGATTTTGTTACAGAGTACATCTGTTCTTTGGCTTATACTCCTGGCTTTCTGTAATTCATGGTCTCAGTCACAGGCACTGCTAGCACTTATCTCTTGGAACATATCTAGTTCACAGTTAAAATTTTTAAAAAAGTGAGTAGCCTGTTTTAAATCTTTGACCATTGTGTTAAGGTCACATGAAAAGGTTAGCAGTAGAAACCCATGTTGAGTTACATCCACAACTCTTACGTCCCTGGTCTGACCTCGACCATCCCTTCACCTCTTGCTTCTGGTCCTTTACTGCTTTTCTTTATCTTACATATTGAGGCCACACACTGGGCCACACCCCACTATTTTACTTTTTAGTCATTCTCTTTCTCTTTCTTTGTTCCAGGTCTGACATAGTTCTGTTTGGATCCTTTCCCTTTGTCTTGTAGGCCAAGGTTTTAAAAAGTTGATCCAACTCTAGAGTTGTGCTTGCTCTTGTGGTGATTCCTGGTGTGTCTAGTGAAGCCCAGTCTCTGCCTGGCAGTCCCTGAGGGGCTGCCTTCCAGGGCCCATATTGTCAGGCTCCTTTGCTCGTGTCCCCAGTTCTGTTTGCTTTTGGACAGTTGGAGAAGCCTTGGCAAAAGATTAAAGGAAAGAGCAAGTCCAGAATATTCCCTCCCTGTGGCTACAGCTCCATCTTCAACTAGGGCTATGGATCCTGCCAGATGCCTGTGTCTTGTAGCCAAGTTATAGAAACTGCTTCCCTCCCTGTGCCTTCAGGCCTAGAGACATGATGGTTAGATTCCCTGTCATTCCTTCCCTGAAGAGCTGTGTCCACCTTTGTAAGAACTTTCCTCATTAAACTCCCTTCAGTTACCCCGTCAGCACCACCTGCCAGGACCCTGAAGAATACATAAGTTGGAGTAAGAACTGTTGTGCAACCTGTCAACCAGGAGTCCCAGTTCCATTGCTTCTAAATTGAAATTTGAATGGAGACAAATATCCTAGTGAGTATTCATACAAAATGTCAGACACTAATTATCCCATAAGGATAGAATGAAAGCTCTGTCCTTACCTAAAATCTAGATGAGATAACTTCAGAATAGTTTTTAAAATCAGAGTTTATATGCACTTACAGCACTGATCCTGGGGTGCTTCATAATCTTTGTAAGACAGGACTGTCTGTTCTTACCACGAGGCTATTCCTAGTAATGGCTCTGATTCTCCCTCCTTGCATGTGCCCAGGTGCCACCATGCCACTAGTTCTTCCCAGTGTGATAGAAGCTGAAGTAGTGTGTACAGCTCTGAGGCAGCCTTCACAAGCTATGACTAGCCATTCCTGGGCTTCTCCCTGTTGATTGAAATCAAGCCTACTGTGCCAGGCTCCCAAGGGAAGGCAGAACAAACCTGAAGGGGCAGAGTTCCTGGCAATGAGATAAGGAACCAGCCTGTCTTTCTCTTATAGAGAGAGAGACACCACGGGTAAGCTGCCATTCTCTTAAGATATCTTGGTATTCAGCCAGCAGTACTCCTGTCTAGTGTGCGTGTATGTATTAATGTTCTCTTGCTGCTGTGAAAACACGGACCACCAGTGTATGAAAACCACACTTAATAACTTATCATCCTGGAGGTCTGAAATGGGTATCACAAGGCAAAAAGATTTTCTATTGAGGCTTTTGCAGGATTAGGAACCATCAGAAAACTTTAGAGGGGAACATCTCTTTTCCTTTCCAGCTTTGATGGCCACTCATATTCCTTAGTTCTTGGGCCTCTTTCTCCATCTCCAGACTCATGGACATCTGCAGAGCCTTTCTCCAGTCATCTGCTCTCTGGTTCTTTATGCTACCCCACATGGCAGATGCCTTGGTGATGAATGTAGCCTGCCTAGATAATTGAGGCTGTCTTTCTGCTTTAAGATCAGCTGGTAAGCAAGTTCAGTTTTGCCTGTAACCTTATGTTCCCCTGGGACATGACTAACCGAGTCCTAGCTAACTTTGGTAGGGATTGTATTATACATTGAAAGTTTTGTGATTGAGAAAAAAGGTTTTATTAACTTGTTTAACTTTAATTTTAGTCTTTATCTTTAATTTTTAAGCAGCTTTCCATTATTATGTTAATTAATCGATACTCCTTATGGAACATTTAGCAGTATTGTCACATAGAAATATTTAATTATTAAGAATTAATTATTTTTCTTCAACTTATGTTCCTGAGAGCATTTTATGCGATAGACACAGCATGAATCTATTAATATCTAGCACAGCCCCTGACTTCAAGAAACTTACAGATTGTGGGAGAAGCATATTTGTCAAAAGTCATCATACAAATGGCAGGGGGTGGGGTGGTTATATGTAGGAGACACTAAGGTAGAAGATGTCTGTATTGGAAAGGATGGAGCTTGTCAGAAGTCAAGTGGAGCAGAAATAAATCACAAGATATACAGAATCCCAGGATGAAAGCACAGCCTTCTAGAGTTAAACCTGCAGACGGGAGGGTTTGACTATAAGGAGTTCCTAGTTCTAGGTAAGACTGTCTCAGTGGACAAGTCTGAGACAGGTTATGTGAGTGATGCTATGAGAATTTGGGGTATTGCCTTGGATCTTAAGAGGACTGCATCATACAAGATGTAACTTTGTATTCTGAGAAGGGAAAGTAAGATGAGCAGGAAGAACAATAAGAGGACATTAGCATTTTTCACTAGAATTTAAGAATGAGTTCAAGTAGGAACAGCCACGTGGATGCACATATACCATGAGGATCCCAATGAGTCACAGGTGAGGTCTGCAATCCCAGGCGGTATGAACAAGACATGAGCAAGTATTGCGAAGGAAGCCCAAAGGTAGCCACCAATTCATGCTGTTTTCTGCCTGTGATTTTTGTTCTAATATAGAACCGAGGTCTGCTATCTTCCAGGTTCCTTTTTATGTTCCGAGAAGGCAGATTTCCTTGCTTTGCCTGGACTAAAAGTATCTGTGCCTGTCGAGTATGTCAGAATTCCTGTGACCAGCAAGCAGGCTCCCTCACAGAGCTCATCATTCTTCCACATACCCATAAATGCCTCATTTCACTACAAGTTTTTTAAAAAAAATTATTTCAAATTATGTGGGTGCAGGGCACATGTGTTTACAGGCTTGCAGGTGCTTGTGAAGAGCAGAAGGTGTCAAAACCCCTGGAGCCCCAGTTATAGGTCAAAGTGAGTGCTAGGCACAAAACTAGGGCTCTCTGCAAGGTAGTCCTCCTAACACTAAGCAATTTCTCCAGCCACAAACGCTGAGCTCGCTGAGCTCGTCCTCCAAGTGGTACTGGGGTTGAACCTCGAGCCGCATACATGGCAGGCAAGCACTCACCACCAGCACTGTTATGTGCTTTGCTGTTCTTGTTGCTGTTTTGTTTTGCTTCTGTTGTTTTTTGCTCCAGTCTCTTCCCTTGCTCTGCATTTTTCCTCTTTCCTTTGTGACACATAG
Seq C2 exon
GCTGGCACCTGTGCAGTGGGAGAGAGTTCTTGTCACTGGTGACTCATCGTGCAGGGAGCACAAGGAAGAGCAAGGGGATAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063087-Gm10125:NR_033552:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.888 A=NA C2=0.035
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: