HsaINT0093576 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr10:31605457-31608024:-
Coord C1 exon
chr10:31607825-31608024
Coord A exon
chr10:31607470-31607824
Coord C2 exon
chr10:31605457-31607469
Length
355 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TCCCTTCCCTTCCCTTCCAGGGA
3' ss Score
13.07
Exon sequences
Seq C1 exon
CTTACACCTAGAGGCTCTCGCTCTACGGCCGGAACCTTGTTGCTAGGGACCGGGCGGTTTGCGGCAACCGTGGGCACTGCTGAATTTGAATTGAGGGGCGAGGGAAAAGTTTTCCTCAGGTGTGGTGGGGAGAGGGAGGCGGATGCCGGGAAACCGTAGGGACGCGGTCAGAAAGGCGACGGGCTGTCGGAGTTGGAAAG
Seq A exon
GTAAAGTTGGAGGCTCGGCGGCGTCCTGCCTCCGCGCTGGCCACACCCGCCGCGGCTGCCCGGGGCAGGGAGGGATCTGGCTGATTCTCCCTGTACCCTGTGCCCTCGGAGCTGCCCCTCCGAGCGCCCAGAGGTCCCCGCCTGCCTGCTTCCTGGAGGCAGGGCTACCATCAGTCCCACGCCTCGCGTGTCCGCCCCCCGCACCCCGGGGCCAAGGAAAGGGATCGCGGTCTGGACTCCCCGGGGAGTTCCCTTGATGAGGGGAAGGGCAGGTTTGGGGACGGCGAGGACACGCGGCGACCGGAGAGAGGCTACCTGACCCGCGCAGCCCGGACTCCCTTCCCTTCCCTTCCAG
Seq C2 exon
GGACGCCTGGTTTCCCCCCAAGCGAACCGGGATGGGAAGTGACTTCAATGAGATTGAACTTCAGCTGGATTGAAAGAGAGGCTAGAAGTTCCGCTTGCCAGCAGCCTCCTTAGTAGAGCGGAATGAGTAATACCCACACGGTGCTTGTCTCACTTCCCCATCCGCACCCGGCCCTCACCTGCTGTCACCTCGGCCTCCCACACCCGGTCCGCGCTCCCCGCCCTCTTCCTCGCGTAGAACCGTGGGATCCTAGGTGGCAGGACTCAGAGCTAAGGTATCCACAGGCCATGAATTCCTTCCTAAATGAGCGGTCATCGCCGTGCAGGACCTTAAGGCAAGAAGCATCGGCTGACAGATGTGATCTCTGAACCTGATAGATTGCTGATTTTATCTTATTTTATCCTTGACTTGGTACAAGTTTTGGGATTTCTGAAAAGACCATACAGATAACCACAAATATCAAGAAAGTCGTCTTCAGTATTAAGTAGAATTTAGATTTAGGTTTCCTTCCTGCTTCCCACCTCCTTCGAATAAGGAAACGTCTTTGGGACCAACTTTATGGAATAAATAAGCTGAGCTGTATTTCAAGTAATATAGTTATAAATTAACAATGTAGCAGTTATTGATAGAGAAATTGAGAAAACTGAAACGTGACCGGAGTATTGGAAATAACGTAGTACATCACCTAGCACAATGACACATAGTAGGTGCTCAATAAATTTATGCTTATAATTTTTGTCACTTCTATGGCAGGATTTTTTTATTAGGTTAAAATTATCTTTTAAACACCTTCCGGAATTTTAGAATATTCATTAATAATGTCTTCAAACCTTTCAACTGAAATAAATTTACAGCTGAAGTCTGATGATTTAAAGTTAGAAAGTTTAATCTTGAATATAAATGAACATTTTCTCTCCCACATTTTCTTGGGCATTTTGAGAAGTAAATGCGTTATTTATTGGTCCATGAAATGTGACTGTAAATATTCTTTGCTATACATTATGTCTATATATCTGCATTCATCCTCAATGCCAAAACTAGAATCATTAGTCTTAATGATCATTTTAAGTACAGGCAGTCCTCGCTTTCCTTGATACCATGTTAACCGAAACTTGTGTATGTCAACACGGTGTCCTTGCTTTGCTTGGTTAAGTGTGAGTTCTTCCTCCCTTTTTTTAAGAGTTGTACAATGTTTTTCAGTCGCCTACCGAATCAGGTCATAGACTATGGAATTGACCCCACCCCACCAACATTTTTACAGCTACCCTGATTTCTGACCAGAAAGGAAAAAAAAACTTTCCAGCTCTATCACACATTTTACCTACTCTTAAACTTAGGAGGTATTACAAATAGCATTTTCTCATGTTCTCTTTCTGGCCTGTACCTCCCTGCTAAGCTTCCTTCAGTGTTCATCCTCACCTCATAGAGAGATGAAGTGAAGAGACAAACAGAAGTCATTTTCTTCCTTACTTTAGTGGTTTCTGGTTTAGTTAGTTTGGGCCAAACTGTGGACAAGTACCTTTTCAGGTAACTTTTTTTTCTTATTTCTATGTCCTCAACACCTAGTGGAGTACGTAGCCAATAGTAGATGCTTAATAAACATTTCTTAAATTAATATTGTTGACCTTTTCTGACCCTGTTCTTGACAGTAAGGTACATAATCTGCCTTCATCCCTTTAGTCCTTAGGAACAGATAAAGTCATGGATATGAAAGTGATCACTGTCATTAATATCCACATTAAAATTGCTCTTGATTTTAGTTTCTCCATAATCATTTTCCCTAAACAATGAACTCTGTTCACCTTTTTTTTTAAAATATGCACAGTGAATATTACTGGTAGCCCAAATCTTCTAACATAAAATTTCCATTTTGTAAAAGCTTCTGATAAGCATATATGTTATGAATTGAATGTTTGATTATTATACTTTAATATTCTTGAAAATATTGATACCTGGACTGGAAAGAAAACAGACAAAAGTAAATCTCAGAATAAATTACTGCTTTAAACATGA
VastDB Features
Vast-tools module Information
Secondary ID
-LOC220930:NR_024284:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCCTCAGGTGTGGTGGG
R:
CACCTAGGATCCCACGGTTCT
Band lengths:
348-703
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)