MmuEX0052953 @ mm9
Exon Skipping
Gene
ENSMUSG00000024238 | Zeb1
Description
zinc finger E-box binding homeobox 1 [Source:MGI Symbol;Acc:MGI:1344313]
Coordinates
chr18:5594371-5633302:+
Coord C1 exon
chr18:5594371-5594470
Coord A exon
chr18:5603742-5604081
Coord C2 exon
chr18:5633202-5633302
Length
340 bp
Sequences
Splice sites
3' ss Seq
AACCGAAACTGGGTGCTTCTGAG
3' ss Score
-16.16
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AAAAACAGATTTGGGGCTCTTGTGCCTGAAATGTCTTGACTGCAGTATGCATTTCTCGGAGAAAACAAAAGGTGTGCGAGAGAGCTCGTTGCTACCACAG
Seq A exon
GAGGTGCCTGATAACCCAGCTTCCCTAAAGCTGGCTGGTTTCTTTAGTAGGAAACACCATCTTTTTCTCTCTTATTTTCTTAATACATGAAGATGGAGTTTTATAGTGCCAACTTCAAAAATGGTTTAGTGCAGTAAGGGGCAGAAAGGCCGCTCTTGGCACAGCTGTTTTTTTACAGCATAGCAAGCATGTGCTCGAGAGCAACGAGATGCTGGCCTTCCCAGAGTGCAGCACCACATTTGTCCTCATCTTGTTCTTTTCTGCCTGATCTCTGTGGAGCTGGGAATGCAGTGTCTTAGAGCGAAGTCCGTGGTGCTTTCACTGTGGTGGTCAGGGCAGG
Seq C2 exon
TTTTCAGTTTAAATTCTCAACTGGCAATTGGCCAAAATTCGCATCTGAAGCCATGAGCACCCAAATGCCATTTTGTGATTTGGCTGCTGACAGCCGACGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024238-'2-6,'2-5,3-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGATTTGGGGCTCTTGTGC
R:
CTGTCAGCAGCCAAATCACAA
Band lengths:
190-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: