MmuEX0052954 @ mm9
Exon Skipping
Gene
ENSMUSG00000024238 | Zeb1
Description
zinc finger E-box binding homeobox 1 [Source:MGI Symbol;Acc:MGI:1344313]
Coordinates
chr18:5603742-5641516:+
Coord C1 exon
chr18:5603742-5604081
Coord A exon
chr18:5633202-5633355
Coord C2 exon
chr18:5641380-5641516
Length
154 bp
Sequences
Splice sites
3' ss Seq
ATAAAATTTGGGTAATTTAGTTT
3' ss Score
1.08
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GAGGTGCCTGATAACCCAGCTTCCCTAAAGCTGGCTGGTTTCTTTAGTAGGAAACACCATCTTTTTCTCTCTTATTTTCTTAATACATGAAGATGGAGTTTTATAGTGCCAACTTCAAAAATGGTTTAGTGCAGTAAGGGGCAGAAAGGCCGCTCTTGGCACAGCTGTTTTTTTACAGCATAGCAAGCATGTGCTCGAGAGCAACGAGATGCTGGCCTTCCCAGAGTGCAGCACCACATTTGTCCTCATCTTGTTCTTTTCTGCCTGATCTCTGTGGAGCTGGGAATGCAGTGTCTTAGAGCGAAGTCCGTGGTGCTTTCACTGTGGTGGTCAGGGCAGG
Seq A exon
TTTTCAGTTTAAATTCTCAACTGGCAATTGGCCAAAATTCGCATCTGAAGCCATGAGCACCCAAATGCCATTTTGTGATTTGGCTGCTGACAGCCGACGTAGGAAGGAGCCACCGAGATGAATGGAGTAACTAGCTCTCCAAAGGAAGACGAGG
Seq C2 exon
GATAATCTTAAGCTTCCACCACAAGAAGACTGTAGAGGTCCCTCCCGCACCAAGAACCTCCTGCAGATCTTTTTCAGTGTTCTTGGAGGTGGGCTGAGAGCTCGATCAGTTTGTGTCAGCCACCTTGTTCTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024238-'3-6,'3-5,4-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGTAAGGGGCAGAAAGG
R:
GGGAGGGACCTCTACAGTCTT
Band lengths:
258-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: