HsaEX0072566 @ hg38
Exon Skipping
Gene
ENSG00000148516 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11642]
Coordinates
chr10:31319125-31387266:+
Coord C1 exon
chr10:31319125-31319292
Coord A exon
chr10:31373018-31373173
Coord C2 exon
chr10:31387124-31387266
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATAAAGTTTGGGTAATTTAGTTT
3' ss Score
-0.72
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTAAACCAGGTGCGGTGGGGAGGGGGGAGGGGTGGAGGCGGAGGGGTGGGGGGGAAGGGGGAGGGAGGGGGAGGAGGTGACTCGAGCATTTAGACACAAGCGAGAGGATCATGGCGGATGGCCCCAGGTGTAAGCGCAGAAAGCAGGCGAACCCGCGGCGCAATAACG
Seq A exon
TTTTCAGTTTAAATTCTCAACTGGCAATTGGCCGAAAACTCCCATCTGAAGACATGATCATCCAAATGTCATTTTGTGATTTGGCTACTGTCTGCTTGACATAGGAAAGCACTATCAAGAAAGACTAATGGAGTGACTATCAAAAGGAAGTCAATG
Seq C2 exon
GACAACCTTAAACTTCCACCACAAGAGGAATATAAAGAGGTCCCTCCTGCACCAAGAAAGATCTGCAGATCTTTTTCAGTGTTCTTGGAGGTGTGGGGTGTGAGAACTTGATCAGTTTGTGTCAGCCACCTTGTTCTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148516-'3-45,'3-32,15-45
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGAGGGGGAGGAGGT
R:
TAGAGAACAAGGTGGCTGACA
Band lengths:
248-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development