HsaEX0072563 @ hg38
Exon Skipping
Gene
ENSG00000148516 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11642]
Coordinates
chr10:31355147-31461237:+
Coord C1 exon
chr10:31355147-31355192
Coord A exon
chr10:31358145-31358333
Coord C2 exon
chr10:31461037-31461237
Length
189 bp
Sequences
Splice sites
3' ss Seq
ATTGTGGTCTACCCTTGCAGCTC
3' ss Score
8.37
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CTGTTTAAGGAAGACAGAGCAGGCATTGGATAATATTCTTATTAAG
Seq A exon
CTCAGGACAGTCAGCTTACCCTGAGGCGCATTGACCACTGGGAGAGATGTGGATATAGAAATCCAATCATGGATCATTAGGAAGAAGGAAGCGTTGGATAGGCTCTCAGCATGGTCCACCACAGTTGCATTAAGGATTGTGTATTACGTTTTTTACTTATGTGAAACACCACCTTCCCCCATCAAGCCT
Seq C2 exon
TTACAAATTATAATACTGTGGTAGAAACAAATTCAGATTCAGATGATGAAGACAAACTGCATATTGTGGAAGAAGAAAGTGTTACAGATGCAGCTGACTGTGAAGGTGTACCAGAGGATGACCTGCCAACAGACCAGACAGTGTTACCAGGGAGGAGCAGTGAAAGAGAAGGGAATGCTAAGAACTGCTGGGAGGATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148516_MULTIEX1-4/16=3-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.385 C2=0.983
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000320985fB7989
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGGAAGACAGAGCAGGCA
R:
TGTCATCCTCCCAGCAGTTCT
Band lengths:
243-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development