HsaEX6088047 @ hg38
Exon Skipping
Gene
ENSG00000148516 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11642]
Coordinates
chr10:31387720-31461237:+
Coord C1 exon
chr10:31387720-31387798
Coord A exon
chr10:31389605-31389695
Coord C2 exon
chr10:31461037-31461237
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCGTACTGATTTTTTTTTAGAGA
3' ss Score
7.48
5' ss Seq
TACGTATGT
5' ss Score
5.54
Exon sequences
Seq C1 exon
GGAAAGCCCCTCAAACCATTTTGTATTCTGTATTACACTTCAGAAAGTGTGGAAGCAAAGGTCATCTAATCTTTAAAAG
Seq A exon
AGATGGGACAACAAAGAAATTCTAGCCTTTGGAGACATCTAGACCAGCACTATATGGTACAAAGATAATTCGAGCCATAAATAGAAGCTAC
Seq C2 exon
TTACAAATTATAATACTGTGGTAGAAACAAATTCAGATTCAGATGATGAAGACAAACTGCATATTGTGGAAGAAGAAAGTGTTACAGATGCAGCTGACTGTGAAGGTGTACCAGAGGATGACCTGCCAACAGACCAGACAGTGTTACCAGGGAGGAGCAGTGAAAGAGAAGGGAATGCTAAGAACTGCTGGGAGGATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148516_MULTIEX1-9/16=8-10
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.983
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGGAAGCAAAGGTCATCT
R:
CTGGTCTGTTGGCAGGTCATC
Band lengths:
171-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains