HsaEX0072568 @ hg19
Exon Skipping
Gene
ENSG00000148516 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:11642]
Coordinates
chr10:31661947-31750166:+
Coord C1 exon
chr10:31661947-31662102
Coord A exon
chr10:31676053-31676195
Coord C2 exon
chr10:31749966-31750166
Length
143 bp
Sequences
Splice sites
3' ss Seq
ACTCTTCTCTCCTCCCTTAGGAC
3' ss Score
12.11
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
TTTTCAGTTTAAATTCTCAACTGGCAATTGGCCGAAAACTCCCATCTGAAGACATGATCATCCAAATGTCATTTTGTGATTTGGCTACTGTCTGCTTGACATAGGAAAGCACTATCAAGAAAGACTAATGGAGTGACTATCAAAAGGAAGTCAATG
Seq A exon
GACAACCTTAAACTTCCACCACAAGAGGAATATAAAGAGGTCCCTCCTGCACCAAGAAAGATCTGCAGATCTTTTTCAGTGTTCTTGGAGGTGTGGGGTGTGAGAACTTGATCAGTTTGTGTCAGCCACCTTGTTCTCTAAAG
Seq C2 exon
TTACAAATTATAATACTGTGGTAGAAACAAATTCAGATTCAGATGATGAAGACAAACTGCATATTGTGGAAGAAGAAAGTGTTACAGATGCAGCTGACTGTGAAGGTGTACCAGAGGATGACCTGCCAACAGACCAGACAGTGTTACCAGGGAGGAGCAGTGAAAGAGAAGGGAATGCTAAGAACTGCTGGGAGGATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148516_MULTIEX1-5/10=3-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCCGAAAACTCCCATCTG
R:
GGCAGGTCATCCTCTGGTACA
Band lengths:
256-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)