BtaEX0040923 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017731 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr14:8216167-8234031:+
Coord C1 exon
chr14:8216167-8216399
Coord A exon
chr14:8219481-8219582
Coord C2 exon
chr14:8233944-8234031
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGGCTTGTGTGCCTTCACAGGAG
3' ss Score
8.39
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GCAAACTTTTTTGGTACCAAGTGCATTTTGACATGCATGTCCGCACCCACACCCGGGAACATCTGTATTATTGCTCCCAGTGTCACTATTCTTCCATCACCAAAAACTGCCTTAAACGCCATGTAATTCAGAAACACAGTAACATCTTGCTGAAGTGTCCCACTGACGGCTGTGACTACTCGACTCCAGATAAATATAAGCTGCAGGCACATCTTAAAGTCCACACTGAGCTG
Seq A exon
GAGCCCTTGCAGGCACCCGATGTTCAGGGCACCATGACTGTTACAAGCCTTCACCTGGGAGGAGCGGACTCATTCTGGTCTTGCATCCTGACTCCTTCACTT
Seq C2 exon
GACAAAAGGAGTTATTCTTGTCCTGTGTGTGAAAAGTCTTTTTCAGAAGATCGGTTGATAAAGTCACATATCAAGACCAACCATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017731_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(39.3=14.1)
A:
NO
C2:
PF134651=zf-H2C2_2=PD(53.6=50.0)
Main Inclusion Isoform:
ENSBTAT00000023578fB7925
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCAGTGTCACTATTCTTCC
R:
CGGGATGGTTGGTCTTGATATGT
Band lengths:
249-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development