BtaEX0040922 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017731 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr14:8213893-8234031:+
Coord C1 exon
chr14:8213893-8215343
Coord A exon
chr14:8216167-8216399
Coord C2 exon
chr14:8233944-8234031
Length
233 bp
Sequences
Splice sites
3' ss Seq
ATGTGAAAATATTTTTTTAGGCA
3' ss Score
5.78
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CGCCATGTCCCCGGACCTCCGTCCGCACGCGGGGCTTTCCAGTGAGTTCTTGATGAAGAGCGATCCCCCCACAGCTGAGGCTCCCGCTGCTACTCCCGAGAAGACCGGTGACACCCAGCAGGGAGGCGCTGCCCCGATTCAGGGCCAGGACGTGGCACCTCTGCTGTCCAAGGCCAAAGGCATGGAAGCAAACTCCGAGGCTCCGGGCGCCAAGAGCCCTCCAGCCGAGGGGCAGAAAGTGGCAGCCTTCTCATGCGATGGCCCAGATCCCAGCAGAGGCCTCAGGTCCAACCCAGCTCAGGCCTCAGACCCTCCCCCGGGAGCTGGTGGGAGGGAGGCGGCCCTGTGCCAGCCTGCCTCTTGCACGCCCGCCCCCGAGCACCGGGCCGGTCTCACTGCCTTCATGAAGATCCTGGACAGTTTGCAGAAGAGGCGGATGAACACCGGCCTGTGTGAGAGGATCCGGAAGGTGTACGGGGACCTGGAGTGTGAATACTGTG
Seq A exon
GCAAACTTTTTTGGTACCAAGTGCATTTTGACATGCATGTCCGCACCCACACCCGGGAACATCTGTATTATTGCTCCCAGTGTCACTATTCTTCCATCACCAAAAACTGCCTTAAACGCCATGTAATTCAGAAACACAGTAACATCTTGCTGAAGTGTCCCACTGACGGCTGTGACTACTCGACTCCAGATAAATATAAGCTGCAGGCACATCTTAAAGTCCACACTGAGCTG
Seq C2 exon
GACAAAAGGAGTTATTCTTGTCCTGTGTGTGAAAAGTCTTTTTCAGAAGATCGGTTGATAAAGTCACATATCAAGACCAACCATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017731_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.348 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF127562=zf-C2H2_2=WD(100=15.9),PF0009621=zf-C2H2=WD(100=4.9)
A:
PF134651=zf-H2C2_2=PU(39.3=14.1)
C2:
PF134651=zf-H2C2_2=PD(53.6=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGTCCAACCCAGCTCAG
R:
CGGGATGGTTGGTCTTGATATGT
Band lengths:
308-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development