HsaEX0072607 @ hg38
Exon Skipping
Gene
ENSG00000066827 | ZFAT
Description
zinc finger and AT-hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr8:134588246-134602933:-
Coord C1 exon
chr8:134601477-134602933
Coord A exon
chr8:134600436-134600668
Coord C2 exon
chr8:134588246-134588393
Length
233 bp
Sequences
Splice sites
3' ss Seq
ATGTGAAAATATTTTTTTAGGCA
3' ss Score
5.78
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGTCTCCTCCTCAGACCTGCATTCTCAAGAGGTGGTTTCAGATGATTTTTTGTTGAAAAATGATACCTCCTCCGCAGAGGCTCATGCTGCTCCTGAGAAGCCCCCAGACATGCAGCACAGAAGCTCAGTCCAGACGCAAGGTGAAGTGATCACACTACTGCTGTCCAAGGCCCAGAGTGCTGGGTCAGATCAGGAAAGCCATGGCGCCCAGAGCCCCCTAGGGGAAGGGCAGAACATGGCTGTGCTTTCAGCTGGTGACCCAGATCCCAGCAGGTGTCTCAGGTCAAACCCAGCTGAGGCCTCAGACCTCCTCCCTCCAGTAGCTGGTGGTGGGGACACCATCACACATCAGCCTGACTCTTGCAAAGCTGCCCCTGAGCACCGGTCAGGCATCACCGCTTTCATGAAGGTCCTGAACAGTTTACAGAAGAAGCAAATGAACACCAGCTTGTGTGAGCGGATCCGGAAGGTTTATGGAGACCTGGAGTGTGAATACTGTG
Seq A exon
GCAAACTTTTTTGGTACCAAGTGCATTTTGATATGCATGTCCGCACCCACACCCGGGAACATCTGTATTATTGCTCTCAGTGTCATTATTCTTCCATCACCAAAAACTGCCTTAAACGCCACGTAATTCAGAAACACAGTAACATCTTGCTGAAGTGTCCCACCGATGGCTGTGACTACTCAACTCCAGATAAATATAAGCTACAGGCACATCTTAAAGTTCACACAGCACTG
Seq C2 exon
GTCTCCATGAGCACCATTTCTGAGGTTCTCGGGAGGAGGGTTCAGCTGAAAGGGCTAATTGGAAAGAGAGCCATGAAATGCCCATATTGTGACTTTTATTTCATGAAGAATGGCTCAGACCTTCAGCGTCATATTTGGGCTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066827_MULTIEX1-5/19=4-8
Average complexity
C2
Mappability confidence:
87%=100=83%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.341 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF056057=zf-Di19=WD(100=7.2)
A:
PF134651=zf-H2C2_2=WD(100=33.3),PF0009621=zf-C2H2=WD(100=32.1)
C2:
PF134651=zf-H2C2_2=PU(38.5=19.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCCAGCAGGTGTCTCAG
R:
TAGCCCTTTCAGCTGAACCCT
Band lengths:
296-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development