HsaEX0072607 @ hg19
Exon Skipping
Gene
ENSG00000066827 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:19899]
Coordinates
chr8:135602511-135649955:-
Coord C1 exon
chr8:135649704-135649955
Coord A exon
chr8:135612679-135612911
Coord C2 exon
chr8:135602511-135602598
Length
233 bp
Sequences
Splice sites
3' ss Seq
ATGTGAAAATATTTTTTTAGGCA
3' ss Score
5.78
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGTTTTTGGTCATGAAGAGGAAGAGAGGCAGGCCTAAGGGGTCCACGAAGAAGTCCAGCACAGAAGAGGAGCTGGCAGAAAACATCGTGAGTCCGACTGAGGACAGCCCGCTGGCTCCGGAGGAAGGGAACAGCCTGCCTCCAAGCAGCTTGGAGTGTAGCAAGTGCTGTCGGAAGTTCTCCAACACGCGCCAGCTGCGGAAGCACATCTGCATTATCGTGCTGAATTTGGGTGAGGAGGAAGGAGAAGCAG
Seq A exon
GCAAACTTTTTTGGTACCAAGTGCATTTTGATATGCATGTCCGCACCCACACCCGGGAACATCTGTATTATTGCTCTCAGTGTCATTATTCTTCCATCACCAAAAACTGCCTTAAACGCCACGTAATTCAGAAACACAGTAACATCTTGCTGAAGTGTCCCACCGATGGCTGTGACTACTCAACTCCAGATAAATATAAGCTACAGGCACATCTTAAAGTTCACACAGCACTG
Seq C2 exon
GACAAAAGGAGTTATTCTTGTCCTGTTTGTGAAAAGTCTTTTTCAGAGGATCGATTGATAAAGTCACATATCAAGACCAACCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066827_MULTIEX1-4/11=C1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=33.3),PF0009621=zf-C2H2=WD(100=32.1)
C2:
PF134651=zf-H2C2_2=PD(53.6=50.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACGAAGAAGTCCAGCAC
R:
GGATGGTTGGTCTTGATATGTGACT
Band lengths:
298-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)