GgaEX0023874 @ galGal4
Exon Skipping
Gene
ENSGALG00000016207 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr2:142162817-142172977:-
Coord C1 exon
chr2:142171512-142172977
Coord A exon
chr2:142170022-142170254
Coord C2 exon
chr2:142162817-142162904
Length
233 bp
Sequences
Splice sites
3' ss Seq
ATGTCTGATTTTATTTTCAGGCA
3' ss Score
9.1
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CACAGCAGTCACAAACATTCAATCCTGTGTAATGTCAGATTGCTTTCTACTGAAAAATGGCACCTCTGCTCCTGATGAGTTAAAAGATTCTGCTGCAAATGGAGAGGAATCTAGTCATTGCAGTTCTGTAAATGAACAGGGTGAAGAAACTCAGCTTTTGCTCACTGAGGATGCAAGTTTAAATGTGAGTCAAAACAATGCAGTGACTGAGGATCTTTCAGGTTCTGAAGAGAAAAATCAGTCTGTTGCTTCTAGTGAGTCAGAAACAAGCAATCCGTCAGTTCTGAACTCAACAGGAACAACTGACCCTTTGCTAGCACCAGATGCTAATGCAGCCGTCAGTCCACAGGCAGCTTCTTCTAATGCAGATAAATCAGATAATCGGAGTGGAGCTGTTGCCTTTATGCAGATCTTGGATAGCTTACAGAAGAGACAAATGAACACAGAGTTGTGTGAGAGGATAAGGAAGGTTTATGGAGATTTGGAGTGTGAATATTGTG
Seq A exon
GCAAGTTATTTTGGTACCAAGTGCATTATGACATGCATGTTCGAACGCACACTCGAGAACATTTGTATTATTGCTCCCAGTGCAGTTACTCTTCCATCACCAAAAACTGCCTTAAGCGTCACGTCATTCAGAAACACAGCAATATTTTGCTGAAATGTCCTACAGAACATTGTGACTACTCTACTCCAGATAAATACAAGCTCCAGGCACATCTTAAAGTTCACTCTGAGCTG
Seq C2 exon
GATAAGAAGAGTTATTCCTGTCCTGTGTGTGAGAAGTCATTTTCCGAAGATCGACTTATAAAATCACACATCAAGATAAACCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016207_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.335 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF127562=zf-C2H2_2=WD(100=16.5)
A:
PF134651=zf-H2C2_2=WD(100=33.3),PF134651=zf-H2C2_2=PU(39.3=14.1)
C2:
PF134651=zf-H2C2_2=PD(53.6=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTGTTGCTTCTAGTGAGTCA
R:
ACTTCTCACACACAGGACAGGA
Band lengths:
299-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]