RnoEX0100983 @ rn6
Exon Skipping
Gene
ENSRNOG00000025140 | Zfat
Description
zinc finger and AT hook domain containing [Source:RGD Symbol;Acc:1310886]
Coordinates
chr7:109123229-109130040:-
Coord C1 exon
chr7:109128602-109130040
Coord A exon
chr7:109127597-109127829
Coord C2 exon
chr7:109123229-109123316
Length
233 bp
Sequences
Splice sites
3' ss Seq
ATGTGAAAATATTTTTTTAGGCA
3' ss Score
5.78
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CAAACTGGAAACCACTGTGGTCAATTCCGACCTCAACTCTCTTGGAGTGGTTTCAGATGATTTTTTACTGAAAACTGATACCTCTTCTGCTGAGCCTCATGCTGCTGCTGAGCTAACCTCGGACACACAGCATCGAGGCTCAGCCCAGACTCAGGGTGAAGAAGTCACACTGCTGCTGGCCAAGGCCAAAAGTACTGGACCAGACTCAGAGAGTCCTCCAAGTGGAGGGCAGAATGTGGGTGCTCTGCCAGCCAGTGAATCTGACTCTAACAGGTGTCTCAGGGCAAACCCAGCAGAGACCTCAGACCTCCTTCCTACAGTGGCTGATGGAGGAGACCTCGGTGTGTGCCAGCCTGACTCTTGCACGTCGTCCTCTGAGCACCACCCTGGCAGCACAGCATTCATGAAGGTCCTAGACAGTCTCCAGAAGAAGCAGATGAACACCAGTCTTTGCGAGCGGATCCGGAAGGTTTATGGAGACCTGGAGTGTGAATACTGTG
Seq A exon
GCAAACTTTTTTGGTACCAAGTGCATTTTGACATGCATGTCCGCACCCACACCCGGGAACATCTGTATTATTGCTCCCAGTGTCACTACTCTTCCATCACCAAAAACTGCCTTAAACGCCATGTAATTCAGAAACACAGTAACATCTTGCTGAAGTGTCCCACTGACGGCTGTGACTACTCGACTCCAGATAAATATAAGCTACAGGCCCACCTTAAAGTTCACACAGAGCTG
Seq C2 exon
GACAAAAGGAGTTATTCTTGTCCTGTATGTGAAAAATCTTTTTCAGAAGACCGATTGATAAAGTCACATATCAAGACTAATCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025140_MULTIEX2-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF127562=zf-C2H2_2=WD(100=16.4),PF0009621=zf-C2H2=WD(100=5.0)
A:
PF134651=zf-H2C2_2=PU(39.3=14.1)
C2:
PF134651=zf-H2C2_2=PD(53.6=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGGTGTCTCAGGGCAAAC
R:
TGTGACTTTATCAATCGGTCTTCTGA
Band lengths:
300-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]