MmuEX0052978 @ mm9
Exon Skipping
Gene
ENSMUSG00000022335 | Zfat
Description
zinc finger and AT hook domain containing [Source:MGI Symbol;Acc:MGI:2681865]
Coordinates
chr15:68001698-68012720:-
Coord C1 exon
chr15:68011279-68012720
Coord A exon
chr15:68010273-68010505
Coord C2 exon
chr15:68001698-68001785
Length
233 bp
Sequences
Splice sites
3' ss Seq
ATGTGCAAATATTTTTTTAGGCA
3' ss Score
6.88
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CAAACTAGAAACCACTGTGGTCTCCTCCGACCTCAACTCTCTTGGAGTGGTTTCAGATGATTTTTTACTGAAAAGCGATACCTCCTCTGCTGAGCCTCCCGCTGCTGCCGAGGCAACCTCGGATACACAGCATCGAGACTCAGCCCAGACTCAGGGTGAAGAAGTCACACTGCTGCTGGCCAAGGCCAAAAGTGCTGGACCAGACCCAGAGAGCTCTCCGGGTGGAAGGCAGAAGGTGGGTGCTCTGCCAGCCAGTGAATCTGACTCTAGCACATGTCTCAGGGCAAACCCAACAGAAGCCTCAGACCTCCTTCCTACAGTGACTGATGGAGGGGACCTTGGTGTGTGCCAGCCTGACTCCTGCACACCATCCTCTGAGCACCACCCTGGCAGCACAGCATTCATGAAGGTCCTGGACAGTCTCCAGAAGAAGCAGATGAACACCAGTCTTTGTGAGCGGATCCGGAAGGTTTACGGAGACCTGGAGTGTGAATACTGCG
Seq A exon
GCAAACTTTTTTGGTACCAGGTGCATTTTGACATGCATGTCCGCACCCACACCCGGGAACATCTGTATTATTGCTCCCAGTGTCACTATTCTTCCATCACCAAAAACTGCCTTAAACGCCATGTAATTCAGAAACACAGTAACATCTTGCTGAAGTGCCCCACTGACGGCTGTGACTACTCGACTCCAGATAAATATAAGCTGCAGGCCCATCTTAAAGTTCACACAGAGCTG
Seq C2 exon
GACAAAAGGAGTTATTCTTGTCCTGTATGTGAAAAATCATTTTCAGAAGACCGATTGATAAAGTCACATATCAAGACTAATCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022335_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF127562=zf-C2H2_2=WD(100=16.4),PF0009621=zf-C2H2=WD(100=5.0)
A:
PF134651=zf-H2C2_2=PU(39.3=14.1)
C2:
PF134651=zf-H2C2_2=PD(53.6=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAGCACATGTCTCAGGGCA
R:
TGTGACTTTATCAATCGGTCTTCTGA
Band lengths:
303-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: