DreEX0086390 @ danRer10
Exon Skipping
Gene
ENSDARG00000077987 | zfat
Description
zinc finger and AT hook domain containing [Source:ZFIN;Acc:ZDB-GENE-130204-2]
Coordinates
chr16:25432658-25434607:+
Coord C1 exon
chr16:25432658-25433916
Coord A exon
chr16:25434210-25434442
Coord C2 exon
chr16:25434523-25434607
Length
233 bp
Sequences
Splice sites
3' ss Seq
CTGTCATGTTCCCTCAACAGGTA
3' ss Score
12.03
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
TGAGCTTAAAATCACAGAGGAGCTGTCGCAGCTCAATGCCCAGGAGCTGTTGACCACTGAAATGAGCTGTATGGCTCAAGAAGACCTTCAGTCTCAGTGCTCGGAGAGTTTAGTGGTGGAGTCGGACCTTCTCGCAGAGAACTCGCAAGAGATGGATACATGTGCAGTTGCGCAAACGCAAGAGATGGCCTGTGAAGATGCCATAAATACGCAAATAACTCAAGATGAACCACTTGAAGTGCAGAGCAGCGTGACAAAAGAAGAACAGACTCCTGTTCAGGAAACTGTTGCTGAAAATGCACAAACAGACCCAGAGCAGCTCCCAGAGGAGCATCAAAATGAGCTAATTACACAAGCTAATGCAGAACTACACATTTCAGAGCAAGAGGAAATATCTGCTTTCAAACAGATCCTAGAACAGATGCAGAAACGACAGCTTAACATGGAAGTGTTTGAACGGATTCGGAAAGTGTACGGAGATCTTGAATGTGAATACTGTG
Seq A exon
GTAAGCTTTTCTGGTACCAAGTGCACTACAATACACATGTGCGAACACACACGAGAGAGCACCTCCATTACTGTTCTCAGTGCAGTTATTCCTCCATCACGAAAAACTGCCTGAAGCGGCACGTCATTCAGAGGCATTCAGACATCCTGCTGAAGTGTCCCTCTGAAGGATGCCAATACTGCACACCTGATAAATACAAGCTTCAGGCTCATCTCAAAACCCACTCGGACATA
Seq C2 exon
GTCAAAAAGAGTTTTACGTGCCCAGTGTGTCAAGAATCGGTTCCTGAGGATAAAGTTAGAGCTCATACCAAGATCAATCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077987-'11-10,'11-8,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF056057=zf-Di19=WD(100=8.1),PF121713=zf-C2H2_jaz=WD(100=5.0)
A:
PF134651=zf-H2C2_2=WD(100=33.3),PF134651=zf-H2C2_2=PU(44.0=14.1)
C2:
PF134651=zf-H2C2_2=PD(48.0=41.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTTGAAGTGCAGAGCAG
R:
CTTGACACACTGGGCACGTAA
Band lengths:
306-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]