BtaEX0040942 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007122 | ZFP2
Description
Bos taurus zinc finger protein 2 homolog (mouse) (ZFP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098146]
Coordinates
chr7:2375036-2384528:-
Coord C1 exon
chr7:2384432-2384528
Coord A exon
chr7:2382677-2382880
Coord C2 exon
chr7:2375036-2375158
Length
204 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTGCAGAAG
3' ss Score
11.39
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
CTCCATATTCTCTGGATCCTGCCAATCCCCTGGGAAGGACACCACAGGAAGGAAGGAGAAGGCAATGGCTGCTGGGCCTCTACTTTGGGGAGTTCAG
Seq A exon
AAGGTTACTGCTAGTCACATGGAGCAGATGTCACCATGAAGGATTTTAGTGCTTTTCTAGATATGACAGGATGCAAGAACTGGGCTCATAATATTGTCTCCTGAAAATAAAGACCTGTCTAAAGACCTGTTCTGCCAGTTTTCCCAGAAGACAGATGCTTCATTCCTGATCTCCACCCTGAACTCTTTTCAGGGGGTGTTGAAG
Seq C2 exon
TTTCAGGATTCAAGGATGTGTCTGCGGACTTCACCTGGGAGGAGCAGATCCATCTAGATTCTCCTCAGAGGAACCTGTATGGGGAAGTGATGCTGAGAAACTATAGGAACCTGGTTTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007122_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATATTCTCTGGATCCTGCC
R:
CCAGTGAAACCAGGTTCCTAT
Band lengths:
220-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development