BtaALTA0033728-2/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000007122 | ZFP2
Description
Bos taurus zinc finger protein 2 homolog (mouse) (ZFP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098146]
Coordinates
chr7:2375036-2384528:-
Coord C1 exon
chr7:2384432-2384528
Coord A exon
chr7:2375153-2375158
Coord C2 exon
chr7:2375036-2375152
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTTTAAGCAGGAATTTATAGTTT
3' ss Score
-6.36
Exon sequences
Seq C1 exon
CTCCATATTCTCTGGATCCTGCCAATCCCCTGGGAAGGACACCACAGGAAGGAAGGAGAAGGCAATGGCTGCTGGGCCTCTACTTTGGGGAGTTCAG
Seq A exon
TTTCAG
Seq C2 exon
GATTCAAGGATGTGTCTGCGGACTTCACCTGGGAGGAGCAGATCCATCTAGATTCTCCTCAGAGGAACCTGTATGGGGAAGTGATGCTGAGAAACTATAGGAACCTGGTTTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007122-4-7,4-6,4-5,4-4-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAAGGAAGGAGAAGGCA
R:
AGATGGATCTGCTCCTCCCAG
Band lengths:
103-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development