HsaALTA0009685-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000198939 | ZFP2
Description
ZFP2 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:26138]
Coordinates
chr5:178895894-178912719:+
Coord C1 exon
chr5:178895894-178895974
Coord A exon
chr5:178912584-178912589
Coord C2 exon
chr5:178912590-178912719
Length
6 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCTTATTGAGGAATTTTTAGTTT
3' ss Score
-2.35
Exon sequences
Seq C1 exon
AAATGTAGTCTGGCGCTCCGGGCTGTAAGCGCCGGTCGCGGCTGTGTCGGTCGCCGCTGCTCCCGCTCCTGCTGGGAGAGG
Seq A exon
TTTCAG
Seq C2 exon
GAGTCAGTGACCTTCAAGGATGTGTCCATAGATTTCTCTTGGGAAGAGTGGATTCAAGCAGATTCTGCTCAGAGGATGACCGTGTATGGGGAGGTGATGCTGGAGAACTACAGGAACCCGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198939-0-4,0-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTAGTCTGGCGCTCCG
R:
GGACACATCCTTGAAGGTCACT
Band lengths:
108-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development