BtaEX0040994 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000016757 | ZKSCAN1

Description

zinc finger with KRAB and SCAN domains 1 [Source:HGNC Symbol;Acc:HGNC:13101]

Coordinates

chr25:36941800-36947272:-

Coord C1 exon

chr25:36947119-36947272

Coord A exon

chr25:36945053-36945144

Coord C2 exon

chr25:36941800-36942692

Length

92 bp

Sequences

Splice sites

3' ss Seq

GCTCCTTTCTCCTCCTTCAGCTC

3' ss Score

9.93

5' ss Seq

CAGGTGAGC

5' ss Score

9.6

Exon sequences

Seq C1 exon

GTCCCAGGTCAAGTTCATGGGCCTGAGATGCTCGCAAGGGGGATGGTGCCTCTGGATCCAGTGCAGGAGTCGTCGAGCTTTGACCTTCCTCATGAGCCCACCCAGTCCCATTTCAAGCATTCATCTCGGAAACCCCGTCTGTTACAACCTCGAG

Seq A exon

CTCTCCCTGCCACCCACGTTCCTGCCCCTCATCCTGAGGGGGCTCCCAGAGACCAGGCGATGGCATCTGCATTGTTCTCGGCAGATTCCCAG

Seq C2 exon

GTTGTGAAAACAGGAATGAGAATGAGGAGTCCACCTCAAAGGCTGAAAGTGCAGAAGACTCGGCATCACGTGGGGAGACTGCAGGAAAATTCCAGAAAGATGTCGGAGAAAAGCGTGAACAGCAGGGCAGAGTGGTAGAAAGGCAGCAGAGAAACCCTGAGGAGAAAGCTGGAAAAGAAAAGAGAGACTCAGGGCCAGCTACAGTCAAGGAGAAAAAACCCAGCACAGGAGAGCGAGGCCCAAGGGAGAAGGGGAAGGGTCTGGGGAGAAGCTTCAGCCTGAGCTCCAACTTCACCACTACCGAGGAGGTTCCCACGGGAACCAAGGCCCACAGATGTGACGAATGTGGAAAATGCTTCACACGGAGTTCAAGCCTTATTCGCCATAAAATAATCCACACTGGAGAGAAGCCCTATGAATGTAGTGAGTGTGGGAAAGCCTTCAGTCTTAACTCAAACCTCGTCCTGCATCAGCGCATCCACACAGGAGAGAAGCCTCAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000016757_MULTIEX1-1/2=C1-C2

Average complexity

C2

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.942 A=0.968 C2=0.387

Domain overlap (PFAM):

C1:

PF0202312=SCAN=PD(1.1=1.9)

A:

NO

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7)

Main Inclusion Isoform:

ENSBTAP00000029042