BtaEX0040995 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016757 | ZKSCAN1
Description
zinc finger with KRAB and SCAN domains 1 [Source:HGNC Symbol;Acc:HGNC:13101]
Coordinates
chr25:36941800-36947272:-
Coord C1 exon
chr25:36947119-36947272
Coord A exon
chr25:36944659-36944785
Coord C2 exon
chr25:36941800-36942692
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGGATCTCGTGTTATTTCAGGCA
3' ss Score
5.39
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GTCCCAGGTCAAGTTCATGGGCCTGAGATGCTCGCAAGGGGGATGGTGCCTCTGGATCCAGTGCAGGAGTCGTCGAGCTTTGACCTTCCTCATGAGCCCACCCAGTCCCATTTCAAGCATTCATCTCGGAAACCCCGTCTGTTACAACCTCGAG
Seq A exon
GCAATGGTGAAGATCGAGGACATGGCCGTGTCCCTCATCCTGGAGGAATGGGGATGTCAGAACCTGGCTCGGAGGAATCTCAATAGGGACACCAGGCAGGAGAATTATGGGAACGTGATTTCCCAGG
Seq C2 exon
GTTGTGAAAACAGGAATGAGAATGAGGAGTCCACCTCAAAGGCTGAAAGTGCAGAAGACTCGGCATCACGTGGGGAGACTGCAGGAAAATTCCAGAAAGATGTCGGAGAAAAGCGTGAACAGCAGGGCAGAGTGGTAGAAAGGCAGCAGAGAAACCCTGAGGAGAAAGCTGGAAAAGAAAAGAGAGACTCAGGGCCAGCTACAGTCAAGGAGAAAAAACCCAGCACAGGAGAGCGAGGCCCAAGGGAGAAGGGGAAGGGTCTGGGGAGAAGCTTCAGCCTGAGCTCCAACTTCACCACTACCGAGGAGGTTCCCACGGGAACCAAGGCCCACAGATGTGACGAATGTGGAAAATGCTTCACACGGAGTTCAAGCCTTATTCGCCATAAAATAATCCACACTGGAGAGAAGCCCTATGAATGTAGTGAGTGTGGGAAAGCCTTCAGTCTTAACTCAAACCTCGTCCTGCATCAGCGCATCCACACAGGAGAGAAGCCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016757_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.942 A=0.535 C2=0.387
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(1.1=1.9)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCGAGCTTTGACCTTCCTC
R:
CAGGGTTTCTCTGCTGCCTTT
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development