HsaEX0072818 @ hg19

Exon Skipping

Gene

ENSG00000106261 | ZKSCAN1

Description

zinc finger with KRAB and SCAN domains 1 [Source:HGNC Symbol;Acc:13101]

Coordinates

chr7:99627484-99639312:+

Coord C1 exon

chr7:99627484-99627575

Coord A exon

chr7:99627872-99627998

Coord C2 exon

chr7:99630928-99639312

Length

127 bp

Sequences

Splice sites

3' ss Seq

TTTGTCTCGTGTTATTTTAGGCA

3' ss Score

9.05

5' ss Seq

AGGGTAAGA

5' ss Score

9.21

Exon sequences

Seq C1 exon

CTCTTCCTGCTGCCCACATTCCTGCACCCCCTCATGAGGGTAGTCCCAGAGACCAGGCGATGGCATCTGCACTATTCACAGCGGATTCCCAG

Seq A exon

GCAATGGTGAAGATCGAGGACATGGCTGTGTCCCTCATTCTGGAGGAATGGGGATGTCAGAATCTGGCTCGGAGGAATCTCAGTAGGGACAACAGGCAGGAGAATTATGGGAGCGCATTTCCCCAGG

Seq C2 exon

GTGGTGAAAACAGGAATGAGAACGAGGAGTCAACCTCAAAGGCTGAAACCTCGGAAGATTCAGCATCACGCGGGGAGACAACAGGAAGATCCCAGAAAGAGTTTGGAGAGAAACGTGACCAGGAGGGCAAAACAGGAGAAAGACAGCAGAAAAACCCTGAGGAGAAAACCAGGAAAGAGAAAAGAGATTCAGGGCCAGCTATAGGAAAGGACAAAAAAACCATCACAGGAGAGAGAGGTCCAAGGGAGAAGGGGAAAGGATTGGGAAGAAGCTTCAGTCTGAGCTCCAACTTCACCACCCCTGAAGAAGTTCCCACGGGAACAAAGTCTCACAGATGTGATGAATGTGGTAAATGCTTCACGAGAAGTTCAAGCCTTATCCGCCATAAAATAATCCACACTGGAGAAAAGCCCTATGAATGTAGTGAGTGTGGGAAAGCCTTCAGTCTTAACTCCAACCTTGTCCTGCATCAGAGGATCCACACAGGAGAGAAACCTCAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000106261-'11-10,'11-8,12-10

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.935 A=0.481 C2=0.387

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=WD(100=95.3)

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.4),PF097235=Zn-ribbon_8=WD(100=13.8),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7)

Main Inclusion Isoform:

ENSP00000323148