RnoEX0101926 @ rn6

Exon Skipping

Gene

ENSRNOG00000001335 | Zkscan1

Description

zinc finger with KRAB and SCAN domains 1 [Source:RGD Symbol;Acc:1560616]

Coordinates

chr12:19239054-19247387:+

Coord C1 exon

chr12:19239054-19239204

Coord A exon

chr12:19242179-19242305

Coord C2 exon

chr12:19245232-19247387

Length

127 bp

Sequences

Splice sites

3' ss Seq

GGGATCTCCTGTTATTTCAGGCA

3' ss Score

5.36

5' ss Seq

AGGGTAAGA

5' ss Score

9.21

Exon sequences

Seq C1 exon

GTCCCAGGTCAAGTTCATGGGCCTGAGATGCTTGCCAGGGGTGTGGTGCCTCTGGATCCAGTTCAGGAGTCCTCAAGCTTCGACCATCATGAAGCTGCCCAGTCTCATTTCAAGCATTCGTCTAGAAAGCCTCGTCTCTTATCACCCCGAG

Seq A exon

GCAATGGTGAAGATCGAGGACATGGCCGTGTCCCTCATCCTGGAGGAATGGGGATGTCAGAACCTGGCTCGGAGGAATCTCAATAGGGACAGCAGGCAGATGAATTTGGGAACTGTGTTTTCCCAGG

Seq C2 exon

GTTCTGAGAACAGGAATGGAAGTGAGTCAACCTCAAAAGCTGAAGTCAAAGGAGATTCCACCTCACACGGGGAGATAGCAGGAAGATTCCAGAAAGAGTTTGGAGAGAAGCGGGAACAGCAGGGCAGAGTAATTGAAAGGCAACAGAAAAATCCTGAAGAGAAAACTGGCAAAGAGAAGAAAGCCCCTGGGCCACCTACAGCCAAGGAAAAGAAGCCCACCACAGGAGAGAGGGGCCCAAGGGAGAAGGGTAAAGGTTTGGGAAGAAGCTTCAGCCTGAGTGCAAACTTTAATAATACTCCCGAGGAGATTCCATCAGGAGCAAAGACTCATAGATGTGATGAGTGTGGGAAATGTTTCACAAGAAGCTCAAGCCTTATCCGCCATAAAATCATCCACACTGGAGAGAAACCCTACGAATGTAATGAGTGTGGGAAAGCCTTCAGTCTCAATTCAAACCTTGTCCTACATCAGCGAATCCACACAGGAGAGAAACCGCAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000001335_MULTIEX1-2/2=C1-C2

Average complexity

C2

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.843 A=0.488 C2=0.394

Domain overlap (PFAM):

C1:

PF0202312=SCAN=PD(1.1=2.0)

A:

PF0135222=KRAB=WD(100=95.3)

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7)

Main Inclusion Isoform:

ENSRNOP00000051042